Click here to switch to the map view.

The map label for this gene is rpoE [C]

Identifier: 148826959

GI number: 148826959

Start: 198736

End: 199281

Strand: Reverse

Name: rpoE [C]

Synonym: CGSHiGG_01165

Alternate gene names: 148826959

Gene position: 199281-198736 (Counterclockwise)

Preceding gene: 148826960

Following gene: 148826958

Centisome position: 10.56

GC content: 33.15

Gene sequence:

>546_bases
ATGAATGTTATTTCTGATCTTGAGCTTCAGCAAATTCGCACTCAAATGCTGACATTTGCACAATTGCAAGTAAATCAAGC
CGATCTTGCTGAAGATTTAGTACAAGAAGCTTTTTTAAGTGCATTCAAAAATCTTGATAATTTTAAGCATCAATCTGCAT
TTAAAACTTGGATTTTTGCGATTCTTAAAAATAAGATTATTGATTATTTACGTCAGAAAGGGCGGTTTGTTTTAGAAAGT
GAACTTGAAGATGAAGATACCAATAATTCATTTTTTGATGAAAAGGGGTATTGGAAACCAGAACATTACCCGAGTGAATT
ACAAGGCGAAGAAGAAACGGTTTATTCCGATGAATTTTGGCTGATTTTTGAAACTTGTTTGACTTGTTTACCCGCCAAAC
AGGCAAAAATTTTTATGATGCGAGAGTTTTTAGATCTTTCATCTGAAGAAATTTGTCAAGAAACGCATTTAACTTCGTCT
AATTTACATACCACCCTTTATCGGGCTCGTTTACAGTTGCAAAACTGTCTTTCAAAAAAACTTTAG

Upstream 100 bases:

>100_bases
TTTTTCATTTTAAATTTCCTTTTTTGAGTGTAAAAATAGCTACCTTAGTTTATTAAAGGAAGTGGGTTTCATTTCTTACA
TAAGTTTTAAAGGAGTTAAA

Downstream 100 bases:

>100_bases
GAGAGATTATGCGTTGTCGCCAAGCCACTCGAATGATTTCCGAATCGCACGAACGTTCATTAGATATACAAGAAAAAGTA
GGGCTAAAAGTGCATTTAGC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MNVISDLELQQIRTQMLTFAQLQVNQADLAEDLVQEAFLSAFKNLDNFKHQSAFKTWIFAILKNKIIDYLRQKGRFVLES
ELEDEDTNNSFFDEKGYWKPEHYPSELQGEEETVYSDEFWLIFETCLTCLPAKQAKIFMMREFLDLSSEEICQETHLTSS
NLHTTLYRARLQLQNCLSKKL

Sequences:

>Translated_181_residues
MNVISDLELQQIRTQMLTFAQLQVNQADLAEDLVQEAFLSAFKNLDNFKHQSAFKTWIFAILKNKIIDYLRQKGRFVLES
ELEDEDTNNSFFDEKGYWKPEHYPSELQGEEETVYSDEFWLIFETCLTCLPAKQAKIFMMREFLDLSSEEICQETHLTSS
NLHTTLYRARLQLQNCLSKKL
>Mature_181_residues
MNVISDLELQQIRTQMLTFAQLQVNQADLAEDLVQEAFLSAFKNLDNFKHQSAFKTWIFAILKNKIIDYLRQKGRFVLES
ELEDEDTNNSFFDEKGYWKPEHYPSELQGEEETVYSDEFWLIFETCLTCLPAKQAKIFMMREFLDLSSEEICQETHLTSS
NLHTTLYRARLQLQNCLSKKL

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=144, Percent_Identity=30.5555555555556, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014289
- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21365; Mature: 21365

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVISDLELQQIRTQMLTFAQLQVNQADLAEDLVQEAFLSAFKNLDNFKHQSAFKTWIFA
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILKNKIIDYLRQKGRFVLESELEDEDTNNSFFDEKGYWKPEHYPSELQGEEETVYSDEFW
HHHHHHHHHHHHCCCEEEHHCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHEECCHHH
LIFETCLTCLPAKQAKIFMMREFLDLSSEEICQETHLTSSNLHTTLYRARLQLQNCLSKK
HHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
L
C
>Mature Secondary Structure
MNVISDLELQQIRTQMLTFAQLQVNQADLAEDLVQEAFLSAFKNLDNFKHQSAFKTWIFA
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILKNKIIDYLRQKGRFVLESELEDEDTNNSFFDEKGYWKPEHYPSELQGEEETVYSDEFW
HHHHHHHHHHHHCCCEEEHHCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHEECCHHH
LIFETCLTCLPAKQAKIFMMREFLDLSSEEICQETHLTSSNLHTTLYRARLQLQNCLSKK
HHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]