Click here to switch to the map view.

The map label for this gene is trpA [H]

Identifier: 148826932

GI number: 148826932

Start: 178395

End: 179201

Strand: Direct

Name: trpA [H]

Synonym: CGSHiGG_01030

Alternate gene names: 148826932

Gene position: 178395-179201 (Clockwise)

Preceding gene: 148826931

Following gene: 148826934

Centisome position: 9.45

GC content: 43.37

Gene sequence:

>807_bases
ATGAGCCGTTTTGAAACGCAATTTGCGACACTTAACGCAAAAAATGAAGGGGCTTTCGTGCCGTTCGTTACCCTTTGCGA
CCCTACTTTCGACCGCTCTTTTGAGATCATTTGCACACTTGTGGATAACGGTGCAGATGCTTTAGAACTCGGTTTTCCTT
TTTCCGATCCGCTACTCGATGGCCCAGTTATTCAAGCCGCGAATAATCGTGCTTTAACTGCGGGTCATAGCAGTGAAGAT
AGCTTTAAACTATTGGAAAAAGTGCGGTCAAAATATCCCGAGATTCCGATTAGCTTATTACTTTGTGCCAATTTAATTTT
TGCTAAAGGTTTAGATGCTTTTTATCAACGTTGTGCAGAAGTCGGGGTTGATGCTGTGCTTGTGGCAGATATTCCGTTAC
TCGCAAAAGAAGATTATGTACAAGCGGCTAAAAAACACGGCATTCAACCCGTCTTTATTTGCCCGCCAAATGCGGACGAG
AAAACGATCCAAGGCGTAGCGGAAAATAGCGAAGGCTATACCTATTTAGTTTCCCGTGCTGGCGTAACCAGTGCAGAAAA
TCAAGCCCACGCAGCAAATTTGGATACCCTTGTAGAACAGCTTAAGGCACATAATGCCCCACCAATTTTACAAGGCTTCG
GCATTGCTCAACCAGAGCAAGTTAAAGAAGCGTTGTCTTTGGGCACTGCGGGTGCAATTTCAGGTTCGGCAACGGTGAAA
ATTATTGAGCGAAATTTAGATAATCACGAGCAATGTTTAGCTGAATTAGCTGAATTTGTTCAAACAATGAAAGCTGCAAC
AAAATAA

Upstream 100 bases:

>100_bases
ATCCTGAAAAAGAACAACTTTTAGTGGTTAATCTTTCGGGACGAGGCGATAAAGATATTTTTACCGTTGATAAAATTTTG
ACAGAAAAAGGAATGAAATA

Downstream 100 bases:

>100_bases
GCAAAAAAGAACCCGCACTTGTGGCGGGTTTCTTTTATCGAGAAAATTAAAAATTTAATACTTTATCGGCTTCCATCCAC
CATAAGGGGATGAATGGATT

Product: tryptophan synthase subunit alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MSRFETQFATLNAKNEGAFVPFVTLCDPTFDRSFEIICTLVDNGADALELGFPFSDPLLDGPVIQAANNRALTAGHSSED
SFKLLEKVRSKYPEIPISLLLCANLIFAKGLDAFYQRCAEVGVDAVLVADIPLLAKEDYVQAAKKHGIQPVFICPPNADE
KTIQGVAENSEGYTYLVSRAGVTSAENQAHAANLDTLVEQLKAHNAPPILQGFGIAQPEQVKEALSLGTAGAISGSATVK
IIERNLDNHEQCLAELAEFVQTMKAATK

Sequences:

>Translated_268_residues
MSRFETQFATLNAKNEGAFVPFVTLCDPTFDRSFEIICTLVDNGADALELGFPFSDPLLDGPVIQAANNRALTAGHSSED
SFKLLEKVRSKYPEIPISLLLCANLIFAKGLDAFYQRCAEVGVDAVLVADIPLLAKEDYVQAAKKHGIQPVFICPPNADE
KTIQGVAENSEGYTYLVSRAGVTSAENQAHAANLDTLVEQLKAHNAPPILQGFGIAQPEQVKEALSLGTAGAISGSATVK
IIERNLDNHEQCLAELAEFVQTMKAATK
>Mature_267_residues
SRFETQFATLNAKNEGAFVPFVTLCDPTFDRSFEIICTLVDNGADALELGFPFSDPLLDGPVIQAANNRALTAGHSSEDS
FKLLEKVRSKYPEIPISLLLCANLIFAKGLDAFYQRCAEVGVDAVLVADIPLLAKEDYVQAAKKHGIQPVFICPPNADEK
TIQGVAENSEGYTYLVSRAGVTSAENQAHAANLDTLVEQLKAHNAPPILQGFGIAQPEQVKEALSLGTAGAISGSATVKI
IERNLDNHEQCLAELAEFVQTMKAATK

Specific function: The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate [H]

COG id: COG0159

COG function: function code E; Tryptophan synthase alpha chain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trpA family [H]

Homologues:

Organism=Escherichia coli, GI1787514, Length=268, Percent_Identity=56.7164179104478, Blast_Score=290, Evalue=7e-80,
Organism=Saccharomyces cerevisiae, GI6321412, Length=238, Percent_Identity=28.1512605042017, Blast_Score=110, Evalue=2e-25,

Paralogues:

None

Copy number: 280 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 3,500 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR018204
- InterPro:   IPR002028 [H]

Pfam domain/function: PF00290 Trp_syntA [H]

EC number: =4.2.1.20 [H]

Molecular weight: Translated: 28808; Mature: 28677

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS00167 TRP_SYNTHASE_ALPHA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRFETQFATLNAKNEGAFVPFVTLCDPTFDRSFEIICTLVDNGADALELGFPFSDPLLD
CCCHHHHHEEECCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCC
GPVIQAANNRALTAGHSSEDSFKLLEKVRSKYPEIPISLLLCANLIFAKGLDAFYQRCAE
CCEEECCCCCEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHH
VGVDAVLVADIPLLAKEDYVQAAKKHGIQPVFICPPNADEKTIQGVAENSEGYTYLVSRA
HCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEECC
GVTSAENQAHAANLDTLVEQLKAHNAPPILQGFGIAQPEQVKEALSLGTAGAISGSATVK
CCCCCCCCHHHCCHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCEEE
IIERNLDNHEQCLAELAEFVQTMKAATK
EEECCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SRFETQFATLNAKNEGAFVPFVTLCDPTFDRSFEIICTLVDNGADALELGFPFSDPLLD
CCHHHHHEEECCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCC
GPVIQAANNRALTAGHSSEDSFKLLEKVRSKYPEIPISLLLCANLIFAKGLDAFYQRCAE
CCEEECCCCCEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHH
VGVDAVLVADIPLLAKEDYVQAAKKHGIQPVFICPPNADEKTIQGVAENSEGYTYLVSRA
HCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEECC
GVTSAENQAHAANLDTLVEQLKAHNAPPILQGFGIAQPEQVKEALSLGTAGAISGSATVK
CCCCCCCCHHHCCHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHCCCCCCCCCCCEEE
IIERNLDNHEQCLAELAEFVQTMKAATK
EEECCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA