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The map label for this gene is licC [H]

Identifier: 148826804

GI number: 148826804

Start: 42037

End: 42738

Strand: Reverse

Name: licC [H]

Synonym: CGSHiGG_00270

Alternate gene names: 148826804

Gene position: 42738-42037 (Counterclockwise)

Preceding gene: 148826805

Following gene: 148826803

Centisome position: 2.26

GC content: 33.48

Gene sequence:

>702_bases
ATGAATGCAATCATTTTAGCAGCAGGCCTAGGCAGTCGTTTTAAAGACATCACACAAAGCACACATAAATCATTGTTAGA
TATTCACGGCACACCTAACTTGGAACGAACACTGGCGTTTTTACAGCAAGCGAATATTGATAAAATTGTCATTATTACTG
GGCATTTGCACGAACAATTCAATTATCTACAAGAAAAATATAATTGCACTCTAATTCATAATGAAAAATATCGAGAATAT
AACAGCATTTATTCCTTTTCTCTGGCGCAAGACTTCTTTAATGATTGTTATGTTATTGATGCGGATGTAGTGCTTAATCG
TAATATTTTTCTAACGAAACCATCACACAGCAAATATTTCACAGTTATTCGTTCGGACACTCATAATGAATGGCTACCGA
TTTTAAATAGTAATGGGCAAGTAATGCGTATTGAGATTGGATCATTAAACCAGCCTAGCTTGTCAGGGGTATCTTATTGG
ACAACTCGGGATTGCAATATCATTCTAACTTTGCTCAAAGAATACACAAGTGAAGTGCGGTTAAAAAATCCAAAACTTTA
TTGGGATACCATTTCGATGGAATATATAGAGGAATTGAATATCTATACGGAACAACTTAACAGTGATGATATATTTGAAA
TGGATAACCTTGATGATTATCAGCATATTTTACAAAAATTGACACCAAATAAGGAAAAATAA

Upstream 100 bases:

>100_bases
ATCTTATCTATCAACAGCCAATTAAGCCCATTACCTTACTACTTACCTTATTATTAAGTGCAGGAGTGATCGTTACACTT
TATTACAAAGGGGAACAAAA

Downstream 100 bases:

>100_bases
TGAAAAAATTGACTCTCAGAGAACAACAACTCGTTTGTCTCAATATATTAGATTATTTCCACGCATTATGTGAGCGACAC
CAAATTCACTATTCTCTTGG

Product: lic-1 operon protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MNAIILAAGLGSRFKDITQSTHKSLLDIHGTPNLERTLAFLQQANIDKIVIITGHLHEQFNYLQEKYNCTLIHNEKYREY
NSIYSFSLAQDFFNDCYVIDADVVLNRNIFLTKPSHSKYFTVIRSDTHNEWLPILNSNGQVMRIEIGSLNQPSLSGVSYW
TTRDCNIILTLLKEYTSEVRLKNPKLYWDTISMEYIEELNIYTEQLNSDDIFEMDNLDDYQHILQKLTPNKEK

Sequences:

>Translated_233_residues
MNAIILAAGLGSRFKDITQSTHKSLLDIHGTPNLERTLAFLQQANIDKIVIITGHLHEQFNYLQEKYNCTLIHNEKYREY
NSIYSFSLAQDFFNDCYVIDADVVLNRNIFLTKPSHSKYFTVIRSDTHNEWLPILNSNGQVMRIEIGSLNQPSLSGVSYW
TTRDCNIILTLLKEYTSEVRLKNPKLYWDTISMEYIEELNIYTEQLNSDDIFEMDNLDDYQHILQKLTPNKEK
>Mature_233_residues
MNAIILAAGLGSRFKDITQSTHKSLLDIHGTPNLERTLAFLQQANIDKIVIITGHLHEQFNYLQEKYNCTLIHNEKYREY
NSIYSFSLAQDFFNDCYVIDADVVLNRNIFLTKPSHSKYFTVIRSDTHNEWLPILNSNGQVMRIEIGSLNQPSLSGVSYW
TTRDCNIILTLLKEYTSEVRLKNPKLYWDTISMEYIEELNIYTEQLNSDDIFEMDNLDDYQHILQKLTPNKEK

Specific function: Unknown

COG id: COG4750

COG function: function code M; CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017189
- InterPro:   IPR005835 [H]

Pfam domain/function: PF00483 NTP_transferase [H]

EC number: NA

Molecular weight: Translated: 27253; Mature: 27253

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAIILAAGLGSRFKDITQSTHKSLLDIHGTPNLERTLAFLQQANIDKIVIITGHLHEQF
CCEEEEECCCCHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHH
NYLQEKYNCTLIHNEKYREYNSIYSFSLAQDFFNDCYVIDADVVLNRNIFLTKPSHSKYF
HHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCEEEECCCCCEEE
TVIRSDTHNEWLPILNSNGQVMRIEIGSLNQPSLSGVSYWTTRDCNIILTLLKEYTSEVR
EEEECCCCCCCCEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHE
LKNPKLYWDTISMEYIEELNIYTEQLNSDDIFEMDNLDDYQHILQKLTPNKEK
ECCCEEEEEECCHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNAIILAAGLGSRFKDITQSTHKSLLDIHGTPNLERTLAFLQQANIDKIVIITGHLHEQF
CCEEEEECCCCHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHH
NYLQEKYNCTLIHNEKYREYNSIYSFSLAQDFFNDCYVIDADVVLNRNIFLTKPSHSKYF
HHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHCCEEEEECCEEEECCEEEECCCCCEEE
TVIRSDTHNEWLPILNSNGQVMRIEIGSLNQPSLSGVSYWTTRDCNIILTLLKEYTSEVR
EEEECCCCCCCCEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHE
LKNPKLYWDTISMEYIEELNIYTEQLNSDDIFEMDNLDDYQHILQKLTPNKEK
ECCCEEEEEECCHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800 [H]