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The map label for this gene is licD [H]

Identifier: 148826803

GI number: 148826803

Start: 41240

End: 42037

Strand: Reverse

Name: licD [H]

Synonym: CGSHiGG_00265

Alternate gene names: 148826803

Gene position: 42037-41240 (Counterclockwise)

Preceding gene: 148826804

Following gene: 148826802

Centisome position: 2.23

GC content: 34.21

Gene sequence:

>798_bases
ATGAAAAAATTGACTCTCAGAGAACAACAACTCGTTTGTCTCAATATATTAGATTATTTCCACGCATTATGTGAGCGACA
CCAAATTCACTATTCTCTTGGTGGTGGAACATTAATCGGTGCTATACGCCACAAAGGCTTTATCCCTTGGGATGATGATA
TTGATGTTTATATGCACCGTGATGAATATCAAAGGTTCGTTGATGTTTGGTTTCAAGAAACTCACGAACACTACAATATG
GAAACGGTGGAAGATATCCTTGCTCAATATACTGGTGAAATGGCAAAAATTTTCGATTGCCGCACTCAAATAACAGATGC
TAAGGGAAGAAAAAGCCCAATGTTTATGGATATATTTATCTATGATGGCGTACCGAATGAACCAAAGATCATCTATCCAC
TGATGAAAAAGCATCGAAGAATTAAACTTCGCTTTTCCTCTTGCAAAAAAAGATGGTTAAGGGCAAAAGAAAATACCGTG
AAAAAAGCTATACTTAATAAATTAAGCCACTTTCTATTTTCCAAAATGCAAAAAAATTTAGCACAATTCCAAATAAAATA
TCCGATAAAACAATGCGATTATATTGGTCTTGTATTATCTGACTACGGTGGTTGGCAAAAATCTTATATGCCGAAGGAAT
ATTTTAACCATGTTATTTATAAAGAATTTGAAGGACGACAATTTCAAGTAATGAATGGACATCACGAACACTTAACACAA
TATTATGGAGATTATATGAAGCTTCCACCAGAAGAAGACCAAAAGCCACATCATATTCAAGAAGCGTATATTTTGTAA

Upstream 100 bases:

>100_bases
TCTATACGGAACAACTTAACAGTGATGATATATTTGAAATGGATAACCTTGATGATTATCAGCATATTTTACAAAAATTG
ACACCAAATAAGGAAAAATA

Downstream 100 bases:

>100_bases
GCGAAAGGGCAGATTTAATTCTGCCCTTTTTCAATTATTACTTAACTTTCCCACAATTCAAACAATACAAATACTGACCT
TTAGGATCATTAAATTTAGT

Product: lic-1 operon protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MKKLTLREQQLVCLNILDYFHALCERHQIHYSLGGGTLIGAIRHKGFIPWDDDIDVYMHRDEYQRFVDVWFQETHEHYNM
ETVEDILAQYTGEMAKIFDCRTQITDAKGRKSPMFMDIFIYDGVPNEPKIIYPLMKKHRRIKLRFSSCKKRWLRAKENTV
KKAILNKLSHFLFSKMQKNLAQFQIKYPIKQCDYIGLVLSDYGGWQKSYMPKEYFNHVIYKEFEGRQFQVMNGHHEHLTQ
YYGDYMKLPPEEDQKPHHIQEAYIL

Sequences:

>Translated_265_residues
MKKLTLREQQLVCLNILDYFHALCERHQIHYSLGGGTLIGAIRHKGFIPWDDDIDVYMHRDEYQRFVDVWFQETHEHYNM
ETVEDILAQYTGEMAKIFDCRTQITDAKGRKSPMFMDIFIYDGVPNEPKIIYPLMKKHRRIKLRFSSCKKRWLRAKENTV
KKAILNKLSHFLFSKMQKNLAQFQIKYPIKQCDYIGLVLSDYGGWQKSYMPKEYFNHVIYKEFEGRQFQVMNGHHEHLTQ
YYGDYMKLPPEEDQKPHHIQEAYIL
>Mature_265_residues
MKKLTLREQQLVCLNILDYFHALCERHQIHYSLGGGTLIGAIRHKGFIPWDDDIDVYMHRDEYQRFVDVWFQETHEHYNM
ETVEDILAQYTGEMAKIFDCRTQITDAKGRKSPMFMDIFIYDGVPNEPKIIYPLMKKHRRIKLRFSSCKKRWLRAKENTV
KKAILNKLSHFLFSKMQKNLAQFQIKYPIKQCDYIGLVLSDYGGWQKSYMPKEYFNHVIYKEFEGRQFQVMNGHHEHLTQ
YYGDYMKLPPEEDQKPHHIQEAYIL

Specific function: Transfers phosphorylcholine (ChoP) from choline diphosphonucleoside to the lipopolysaccharide (LPS) [H]

COG id: COG3475

COG function: function code M; LPS biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the licD transferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007074 [H]

Pfam domain/function: PF04991 LicD [H]

EC number: NA

Molecular weight: Translated: 31899; Mature: 31899

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLTLREQQLVCLNILDYFHALCERHQIHYSLGGGTLIGAIRHKGFIPWDDDIDVYMHR
CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEHHHHHCCCCCCCCCCEEEEEH
DEYQRFVDVWFQETHEHYNMETVEDILAQYTGEMAKIFDCRTQITDAKGRKSPMFMDIFI
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
YDGVPNEPKIIYPLMKKHRRIKLRFSSCKKRWLRAKENTVKKAILNKLSHFLFSKMQKNL
ECCCCCCCCEEHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQFQIKYPIKQCDYIGLVLSDYGGWQKSYMPKEYFNHVIYKEFEGRQFQVMNGHHEHLTQ
HHEEEECCHHHCCCCEEEECCCCCCHHCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHH
YYGDYMKLPPEEDQKPHHIQEAYIL
HHHHHHCCCCCCCCCCCHHHHHHCC
>Mature Secondary Structure
MKKLTLREQQLVCLNILDYFHALCERHQIHYSLGGGTLIGAIRHKGFIPWDDDIDVYMHR
CCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEHHHHHCCCCCCCCCCEEEEEH
DEYQRFVDVWFQETHEHYNMETVEDILAQYTGEMAKIFDCRTQITDAKGRKSPMFMDIFI
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
YDGVPNEPKIIYPLMKKHRRIKLRFSSCKKRWLRAKENTVKKAILNKLSHFLFSKMQKNL
ECCCCCCCCEEHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQFQIKYPIKQCDYIGLVLSDYGGWQKSYMPKEYFNHVIYKEFEGRQFQVMNGHHEHLTQ
HHEEEECCHHHCCCCEEEECCCCCCHHCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHH
YYGDYMKLPPEEDQKPHHIQEAYIL
HHHHHHCCCCCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800; 10632893 [H]