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The map label for this gene is slyD [H]

Identifier: 148826658

GI number: 148826658

Start: 1708519

End: 1709091

Strand: Direct

Name: slyD [H]

Synonym: CGSHiEE_08645

Alternate gene names: 148826658

Gene position: 1708519-1709091 (Clockwise)

Preceding gene: 148826657

Following gene: 148826659

Centisome position: 94.24

GC content: 43.8

Gene sequence:

>573_bases
ATGAAAGTAGAAAAAAATGTAGTGGTGAGCATTTCTTACCAAGTTCGCACACAAGATGGCGTATTGGTAGATGAAGCTCC
AGCAAATCAACCACTAGAATATTTACAAGGTCACAATAATTTAGTAGTCGGTCTTGAAAAAGCACTTGAAGGTAAAGAAG
TTGGCGACAAATTTGAAGTACGTGTACAACCTGAAGAAGGTTATGGTGCGTACAGCGAAAATATGGTTCAACGTGTACCA
AAAGATGTATTCCAAGGTGTTGATGAACTTGAAGTCGGTATGCGTTTCTTAGCGGATACTGACATTGGCCCAGTTCCAGT
GGTGATTACTGAAATCGATGGCGATGAAGTTGTAGTTGATGGAAACCATATGTTAGCGGGGCAAGAATTACATTTCACGG
TTGAAGTTGTTGCAGCGCGTGAAGCAACGTTAGAAGAAATTGCTCACGGCCACGTTCACGGTGCACACAGCCACGATGAT
GACGAAGAAGGTCACGGTTGTGGCTGTGGTGGTCATCATCACGAACATAATCACGAACATAATCACGGCAGCTGTGGTTG
CGGCGGTCACTAA

Upstream 100 bases:

>100_bases
AAGAAGAGCCTCGTGTTCATTAATCCGTAAAGTCTTGCGCGTGGAATAATTTTCGTTACAATGATACGGCTTTTTAACCG
ATTTTTATAAGGAAAACATA

Downstream 100 bases:

>100_bases
TTAAAACAGCTCAAAAATTTACCGCACTTTGGCAATGAAGTGCGGTATTTTTTATGAAAAAACCGACAAAATGCACTGAA
AATATTGGATCCTAACGAAC

Product: FKBP-type peptidyl-prolyl cis-trans isomerase SlyD

Products: NA

Alternate protein names: PPIase; Metallochaperone slyD [H]

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MKVEKNVVVSISYQVRTQDGVLVDEAPANQPLEYLQGHNNLVVGLEKALEGKEVGDKFEVRVQPEEGYGAYSENMVQRVP
KDVFQGVDELEVGMRFLADTDIGPVPVVITEIDGDEVVVDGNHMLAGQELHFTVEVVAAREATLEEIAHGHVHGAHSHDD
DEEGHGCGCGGHHHEHNHEHNHGSCGCGGH

Sequences:

>Translated_190_residues
MKVEKNVVVSISYQVRTQDGVLVDEAPANQPLEYLQGHNNLVVGLEKALEGKEVGDKFEVRVQPEEGYGAYSENMVQRVP
KDVFQGVDELEVGMRFLADTDIGPVPVVITEIDGDEVVVDGNHMLAGQELHFTVEVVAAREATLEEIAHGHVHGAHSHDD
DEEGHGCGCGGHHHEHNHEHNHGSCGCGGH
>Mature_190_residues
MKVEKNVVVSISYQVRTQDGVLVDEAPANQPLEYLQGHNNLVVGLEKALEGKEVGDKFEVRVQPEEGYGAYSENMVQRVP
KDVFQGVDELEVGMRFLADTDIGPVPVVITEIDGDEVVVDGNHMLAGQELHFTVEVVAAREATLEEIAHGHVHGAHSHDD
DEEGHGCGCGGHHHEHNHEHNHGSCGCGGH

Specific function: Also involved in hydrogenase metallocenter assembly, probably by participating in the nickel insertion step. This function in hydrogenase biosynthesis requires chaperone activity and the presence of the metal-binding domain, but not PPIase activity [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789748, Length=148, Percent_Identity=70.2702702702703, Blast_Score=207, Evalue=3e-55,
Organism=Escherichia coli, GI1786211, Length=139, Percent_Identity=35.2517985611511, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 20644; Mature: 20644

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS50059 FKBP_PPIASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVEKNVVVSISYQVRTQDGVLVDEAPANQPLEYLQGHNNLVVGLEKALEGKEVGDKFEV
CCCCCEEEEEEEEEEECCCCEEEECCCCCCCHHHHCCCCCEEEEHHHHCCCCCCCCEEEE
RVQPEEGYGAYSENMVQRVPKDVFQGVDELEVGMRFLADTDIGPVPVVITEIDGDEVVVD
EEECCCCCCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEC
GNHMLAGQELHFTVEVVAAREATLEEIAHGHVHGAHSHDDDEEGHGCGCGGHHHEHNHEH
CCEEEECCEEEEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NHGSCGCGGH
CCCCCCCCCC
>Mature Secondary Structure
MKVEKNVVVSISYQVRTQDGVLVDEAPANQPLEYLQGHNNLVVGLEKALEGKEVGDKFEV
CCCCCEEEEEEEEEEECCCCEEEECCCCCCCHHHHCCCCCEEEEHHHHCCCCCCCCEEEE
RVQPEEGYGAYSENMVQRVPKDVFQGVDELEVGMRFLADTDIGPVPVVITEIDGDEVVVD
EEECCCCCCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEC
GNHMLAGQELHFTVEVVAAREATLEEIAHGHVHGAHSHDDDEEGHGCGCGGHHHEHNHEH
CCEEEECCEEEEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
NHGSCGCGGH
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]