Click here to switch to the map view.

The map label for this gene is rraB [H]

Identifier: 148826657

GI number: 148826657

Start: 1708019

End: 1708441

Strand: Direct

Name: rraB [H]

Synonym: CGSHiEE_08640

Alternate gene names: 148826657

Gene position: 1708019-1708441 (Clockwise)

Preceding gene: 148826650

Following gene: 148826658

Centisome position: 94.21

GC content: 37.12

Gene sequence:

>423_bases
ATGTCAAAATTGGCTGAATTACAAGCAGAAACCCGTGAAATTATCGAAGATTTACTTAATGATGGCAGTGATCCAAATGC
GCTTTACATTATTGAGCATCACATCGCACACCACGATTTTGATTTGTTAGAAAAAATTGCGGTTGATGCGTTTAAAGCGG
GCTATGAAGTTTCCGAAGCGGAAGAATTTAAAGATGATGACGGTAAACCAATTTTCTGTTTTGACATCATCAGTGAAGTA
GAATTAAAAGCTGAAATTATCGATGCACAACAAAAACAAATCCTTCCATTGTTAGAAAAACATAAAGGCATTTATGATGG
TTGGGGCACCTATTTTGAAGACCCAAATGCCGATGACGATGAATACGGTGACGATGGGGAATTTTTTGATGATGAAGATG
AAGAAGAGCCTCGTGTTCATTAA

Upstream 100 bases:

>100_bases
GTTCTTTTTTATCGAAAATAATTGTGCGAAATTCTATGCGACTTTTGGTGATTTATCCACTAAAATAACCGCACTTTTGT
TCTTGTTGAAGGATTTTATT

Downstream 100 bases:

>100_bases
TCCGTAAAGTCTTGCGCGTGGAATAATTTTCGTTACAATGATACGGCTTTTTAACCGATTTTTATAAGGAAAACATAATG
AAAGTAGAAAAAAATGTAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MSKLAELQAETREIIEDLLNDGSDPNALYIIEHHIAHHDFDLLEKIAVDAFKAGYEVSEAEEFKDDDGKPIFCFDIISEV
ELKAEIIDAQQKQILPLLEKHKGIYDGWGTYFEDPNADDDEYGDDGEFFDDEDEEEPRVH

Sequences:

>Translated_140_residues
MSKLAELQAETREIIEDLLNDGSDPNALYIIEHHIAHHDFDLLEKIAVDAFKAGYEVSEAEEFKDDDGKPIFCFDIISEV
ELKAEIIDAQQKQILPLLEKHKGIYDGWGTYFEDPNADDDEYGDDGEFFDDEDEEEPRVH
>Mature_139_residues
SKLAELQAETREIIEDLLNDGSDPNALYIIEHHIAHHDFDLLEKIAVDAFKAGYEVSEAEEFKDDDGKPIFCFDIISEVE
LKAEIIDAQQKQILPLLEKHKGIYDGWGTYFEDPNADDDEYGDDGEFFDDEDEEEPRVH

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome [H]

COG id: COG3076

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraB family [H]

Homologues:

Organism=Escherichia coli, GI1790704, Length=115, Percent_Identity=57.3913043478261, Blast_Score=132, Evalue=6e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009671
- InterPro:   IPR016716 [H]

Pfam domain/function: PF06877 DUF1260 [H]

EC number: NA

Molecular weight: Translated: 16091; Mature: 15959

Theoretical pI: Translated: 3.85; Mature: 3.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLAELQAETREIIEDLLNDGSDPNALYIIEHHIAHHDFDLLEKIAVDAFKAGYEVSEA
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHCCCCCHHH
EEFKDDDGKPIFCFDIISEVELKAEIIDAQQKQILPLLEKHKGIYDGWGTYFEDPNADDD
HHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
EYGDDGEFFDDEDEEEPRVH
CCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKLAELQAETREIIEDLLNDGSDPNALYIIEHHIAHHDFDLLEKIAVDAFKAGYEVSEA
CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHCCCCCHHH
EEFKDDDGKPIFCFDIISEVELKAEIIDAQQKQILPLLEKHKGIYDGWGTYFEDPNADDD
HHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
EYGDDGEFFDDEDEEEPRVH
CCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]