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The map label for this gene is lsrB [H]

Identifier: 148826583

GI number: 148826583

Start: 1616866

End: 1617882

Strand: Direct

Name: lsrB [H]

Synonym: CGSHiEE_08220

Alternate gene names: 148826583

Gene position: 1616866-1617882 (Clockwise)

Preceding gene: 148826582

Following gene: 148826584

Centisome position: 89.18

GC content: 43.17

Gene sequence:

>1017_bases
ATGAAAACTCGTATGAAAATGACCGCGCTTTCCATATTGCTCGGTTTATCTGTGACGACTGCCGCACAAGCAGCAGATCG
CATCGCCTTTATCCCCAAATTAGTCGGCGTCGGCTTCTTCACTAGCGGTGGGCAAGGTGCAACTGAAATGGGAAAAACCC
TTGGGGTGGATGTTACCTATGACGGTCCTACGGAACCGAGTGTTTCCAATCAAGTACAATTAATTAATAACTTCGTCAAT
CAAGGCTATAAAGCCATTGTAGTTTCAGCGGTTTCACCTGATGGCTTATGCTCTACATTACAACGAGCGATGAAACGAGG
TGTAAAAGTATTAACTTGGGATTCAGACACTAAACCGGAATGCCGTAGCCACTACATTAACCAAGGAACACCGGAACAAT
TAGGTTCTATGCTTGTTGAGATGGCATCAAGCCAAATAACCAAACCTAACGCCAAAGTTGCCTTCTTTTATTCCAGTCCA
ACGGTCACTGATCAAAATCAATGGGTAAAAGAAGCGAAAGCAAAAATCGCTAAAAATCATCCGGAATGGGAAATTGTCAC
CACTCAATTCGGTTACAACGATGCAATCAAATCACTTCAAACCGCAGAGGGTATTTTAAAAGCTTATCCGGACTTAGATG
CCATTATTGCACCGGATGCCAACGCATTACCGGCCGCCGCACAAGCTGCTGAAAACCTCAAAGTAAATCATGTCGCTATC
GTTGGTTTTAGCACCCCTAACGTGATGCGACCTTATGTAAAACGAGGCACGGTTAAACAGTTTGGTCTTTGGGATGTCGT
ACAACAAGGCAAAATTTCCATTGCCGTAGCAAATGATTTGCTGAAAGGCAAGCCGCTTAATGTCGGTGATAAAGTAGAAG
TTGAAGGTATTGGCACAATTGAAGTATCTCCAAACAAAGTTCAGGGTTACGAATACGAAGCGAAAGGTAACGGCATTGTG
CTATTACCACAACGTGTTGTCTTCACTAAAGACAATATTGATCAGTACAATTTCTAA

Upstream 100 bases:

>100_bases
TGCACTACGGTGCAATGATGCAATGGATACGCCGAAAAGCCAAACATCAAGCAGTCGTAGATTAGTCGTTAAACACTCAA
CCTTAAGAGGAGAACTTGTT

Downstream 100 bases:

>100_bases
TTAAGGAGCATAACAATGGCAGATTTAGATGATATTCGAGACGGTAAAGATTTTGGTTTGGACAAACCACAAACTCATCA
AGCGTTTTATTTAAAAGGCT

Product: autoinducer-2 (AI-2) kinase

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MKTRMKMTALSILLGLSVTTAAQAADRIAFIPKLVGVGFFTSGGQGATEMGKTLGVDVTYDGPTEPSVSNQVQLINNFVN
QGYKAIVVSAVSPDGLCSTLQRAMKRGVKVLTWDSDTKPECRSHYINQGTPEQLGSMLVEMASSQITKPNAKVAFFYSSP
TVTDQNQWVKEAKAKIAKNHPEWEIVTTQFGYNDAIKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKVNHVAI
VGFSTPNVMRPYVKRGTVKQFGLWDVVQQGKISIAVANDLLKGKPLNVGDKVEVEGIGTIEVSPNKVQGYEYEAKGNGIV
LLPQRVVFTKDNIDQYNF

Sequences:

>Translated_338_residues
MKTRMKMTALSILLGLSVTTAAQAADRIAFIPKLVGVGFFTSGGQGATEMGKTLGVDVTYDGPTEPSVSNQVQLINNFVN
QGYKAIVVSAVSPDGLCSTLQRAMKRGVKVLTWDSDTKPECRSHYINQGTPEQLGSMLVEMASSQITKPNAKVAFFYSSP
TVTDQNQWVKEAKAKIAKNHPEWEIVTTQFGYNDAIKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKVNHVAI
VGFSTPNVMRPYVKRGTVKQFGLWDVVQQGKISIAVANDLLKGKPLNVGDKVEVEGIGTIEVSPNKVQGYEYEAKGNGIV
LLPQRVVFTKDNIDQYNF
>Mature_338_residues
MKTRMKMTALSILLGLSVTTAAQAADRIAFIPKLVGVGFFTSGGQGATEMGKTLGVDVTYDGPTEPSVSNQVQLINNFVN
QGYKAIVVSAVSPDGLCSTLQRAMKRGVKVLTWDSDTKPECRSHYINQGTPEQLGSMLVEMASSQITKPNAKVAFFYSSP
TVTDQNQWVKEAKAKIAKNHPEWEIVTTQFGYNDAIKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKVNHVAI
VGFSTPNVMRPYVKRGTVKQFGLWDVVQQGKISIAVANDLLKGKPLNVGDKVEVEGIGTIEVSPNKVQGYEYEAKGNGIV
LLPQRVVFTKDNIDQYNF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=336, Percent_Identity=77.9761904761905, Blast_Score=521, Evalue=1e-149,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36553; Mature: 36553

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTRMKMTALSILLGLSVTTAAQAADRIAFIPKLVGVGFFTSGGQGATEMGKTLGVDVTY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHCEEEEE
DGPTEPSVSNQVQLINNFVNQGYKAIVVSAVSPDGLCSTLQRAMKRGVKVLTWDSDTKPE
CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCH
CRSHYINQGTPEQLGSMLVEMASSQITKPNAKVAFFYSSPTVTDQNQWVKEAKAKIAKNH
HHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC
PEWEIVTTQFGYNDAIKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKVNHVAI
CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCEEEEEEE
VGFSTPNVMRPYVKRGTVKQFGLWDVVQQGKISIAVANDLLKGKPLNVGDKVEVEGIGTI
EEECCCHHHHHHHHCCCCHHCCHHHHHHCCEEEEEEECHHHCCCCCCCCCEEEEEEEEEE
EVSPNKVQGYEYEAKGNGIVLLPQRVVFTKDNIDQYNF
EECCCCEECEEEEECCCCEEEECCEEEEEECCCCCCCC
>Mature Secondary Structure
MKTRMKMTALSILLGLSVTTAAQAADRIAFIPKLVGVGFFTSGGQGATEMGKTLGVDVTY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHCEEEEE
DGPTEPSVSNQVQLINNFVNQGYKAIVVSAVSPDGLCSTLQRAMKRGVKVLTWDSDTKPE
CCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCH
CRSHYINQGTPEQLGSMLVEMASSQITKPNAKVAFFYSSPTVTDQNQWVKEAKAKIAKNH
HHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC
PEWEIVTTQFGYNDAIKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKVNHVAI
CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCEEEEEEE
VGFSTPNVMRPYVKRGTVKQFGLWDVVQQGKISIAVANDLLKGKPLNVGDKVEVEGIGTI
EEECCCHHHHHHHHCCCCHHCCHHHHHHCCEEEEEEECHHHCCCCCCCCCEEEEEEEEEE
EVSPNKVQGYEYEAKGNGIVLLPQRVVFTKDNIDQYNF
EECCCCEECEEEEECCCCEEEECCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA