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The map label for this gene is lsrD [H]

Identifier: 148826582

GI number: 148826582

Start: 1615826

End: 1616830

Strand: Direct

Name: lsrD [H]

Synonym: CGSHiEE_08215

Alternate gene names: 148826582

Gene position: 1615826-1616830 (Clockwise)

Preceding gene: 148826581

Following gene: 148826583

Centisome position: 89.12

GC content: 41.0

Gene sequence:

>1005_bases
ATGTTGACGATAAAAAAACATGCTTGGGAATTGACATTGCTACTACTATTAATACTTGAAATTCTTGGATTCGGTCTATT
CAATCCCTTAATGCTTGATCTCAACGTACTCTTATATAGTACAAGTGATTTCATCTATATTGGTATGCTGGCACTTCCGT
TAACAATGATTATTATCAGTGGGGGAATGGACATTTCTTTCGGTTCAACGGTTGGCTTATGCTCCATAACATTAGGCGTG
TTATTTAAATTGGATATTCCGATTAGCCTTGCTATCCCTGCAACCTTTGTTGTGGGGCTACTGTGTGGGTTCATTAATGC
AGGACTTATTCTTTATACAAAAGTTAATCCCTTGGTGATCACGCTAGGCACCATGTATCTTTTTGGCGGTGGCGCATTGC
TCCTGTCCGGTTTCGCCGGAGCAACCGGTTATGAAGGTATCGGTGGATTCCCTGAATCACTGTTAGAATTTGCCAATCAA
ACCTTATTAGGAATTCCCACTCCTATTCTTTACTTCATATTAATGACGTTTATTTTCTGGCTACTTATGCACAAAACCAA
AATTGGAAGAAGCATTTTTCTAATTGGTCAGAGTGAACGAACTTCTCGTTACAGTGCAGTTCCGATTCAAAAAACACTTT
TTCTCATTTACGCATTTATCGGACTTGTTGCCGCTTTTGTCGCAGTGCTATTAGTGTCCTATTTCGGTTCCGCCCGTTCA
GATTTAGGCAGCTCATTATTAATGCCGGTACTGACCGCCGTTGTATTGGGTGGCGCCAATATTTATGGTGGCTCAGGCTC
AATTATCGGTACCGCTATCGCTGCCCTATTAATTGGTTATTTACAACAAGGTTTACAAATGATCGGTATTCCAAATGAGA
TTTCAAGCGCCTTATCCGGTGCCTTACTGATTATCGTATTAATCGGCAAATCCGTTAGCTTGCACTACGGTGCAATGATG
CAATGGATACGCCGAAAAGCCAAACATCAAGCAGTCGTAGATTAG

Upstream 100 bases:

>100_bases
ATGATTTCTCACAATCTCAAATTACAACGCTATGCACGATTTTTAAAAGACGACTAGCCCCATTTGTTTATCAAAGTGCG
GTCATTAAAGGAGAAAGATG

Downstream 100 bases:

>100_bases
TCGTTAAACACTCAACCTTAAGAGGAGAACTTGTTATGAAAACTCGTATGAAAATGACCGCGCTTTCCATATTGCTCGGT
TTATCTGTGACGACTGCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: AI-2 import system permease protein lsrD [H]

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MLTIKKHAWELTLLLLLILEILGFGLFNPLMLDLNVLLYSTSDFIYIGMLALPLTMIIISGGMDISFGSTVGLCSITLGV
LFKLDIPISLAIPATFVVGLLCGFINAGLILYTKVNPLVITLGTMYLFGGGALLLSGFAGATGYEGIGGFPESLLEFANQ
TLLGIPTPILYFILMTFIFWLLMHKTKIGRSIFLIGQSERTSRYSAVPIQKTLFLIYAFIGLVAAFVAVLLVSYFGSARS
DLGSSLLMPVLTAVVLGGANIYGGSGSIIGTAIAALLIGYLQQGLQMIGIPNEISSALSGALLIIVLIGKSVSLHYGAMM
QWIRRKAKHQAVVD

Sequences:

>Translated_334_residues
MLTIKKHAWELTLLLLLILEILGFGLFNPLMLDLNVLLYSTSDFIYIGMLALPLTMIIISGGMDISFGSTVGLCSITLGV
LFKLDIPISLAIPATFVVGLLCGFINAGLILYTKVNPLVITLGTMYLFGGGALLLSGFAGATGYEGIGGFPESLLEFANQ
TLLGIPTPILYFILMTFIFWLLMHKTKIGRSIFLIGQSERTSRYSAVPIQKTLFLIYAFIGLVAAFVAVLLVSYFGSARS
DLGSSLLMPVLTAVVLGGANIYGGSGSIIGTAIAALLIGYLQQGLQMIGIPNEISSALSGALLIIVLIGKSVSLHYGAMM
QWIRRKAKHQAVVD
>Mature_334_residues
MLTIKKHAWELTLLLLLILEILGFGLFNPLMLDLNVLLYSTSDFIYIGMLALPLTMIIISGGMDISFGSTVGLCSITLGV
LFKLDIPISLAIPATFVVGLLCGFINAGLILYTKVNPLVITLGTMYLFGGGALLLSGFAGATGYEGIGGFPESLLEFANQ
TLLGIPTPILYFILMTFIFWLLMHKTKIGRSIFLIGQSERTSRYSAVPIQKTLFLIYAFIGLVAAFVAVLLVSYFGSARS
DLGSSLLMPVLTAVVLGGANIYGGSGSIIGTAIAALLIGYLQQGLQMIGIPNEISSALSGALLIIVLIGKSVSLHYGAMM
QWIRRKAKHQAVVD

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787794, Length=324, Percent_Identity=66.358024691358, Blast_Score=421, Evalue=1e-119,
Organism=Escherichia coli, GI1788896, Length=307, Percent_Identity=27.6872964169381, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790191, Length=298, Percent_Identity=27.1812080536913, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693152, Length=245, Percent_Identity=30.6122448979592, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787793, Length=286, Percent_Identity=31.4685314685315, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790524, Length=200, Percent_Identity=25.5, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788471, Length=212, Percent_Identity=31.6037735849057, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI145693214, Length=283, Percent_Identity=25.7950530035336, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789992, Length=322, Percent_Identity=25.4658385093168, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35666; Mature: 35666

Theoretical pI: Translated: 8.92; Mature: 8.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTIKKHAWELTLLLLLILEILGFGLFNPLMLDLNVLLYSTSDFIYIGMLALPLTMIIIS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHC
GGMDISFGSTVGLCSITLGVLFKLDIPISLAIPATFVVGLLCGFINAGLILYTKVNPLVI
CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCEEEEEECCCCEE
TLGTMYLFGGGALLLSGFAGATGYEGIGGFPESLLEFANQTLLGIPTPILYFILMTFIFW
HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
LLMHKTKIGRSIFLIGQSERTSRYSAVPIQKTLFLIYAFIGLVAAFVAVLLVSYFGSARS
HHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
DLGSSLLMPVLTAVVLGGANIYGGSGSIIGTAIAALLIGYLQQGLQMIGIPNEISSALSG
HHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ALLIIVLIGKSVSLHYGAMMQWIRRKAKHQAVVD
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLTIKKHAWELTLLLLLILEILGFGLFNPLMLDLNVLLYSTSDFIYIGMLALPLTMIIIS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHC
GGMDISFGSTVGLCSITLGVLFKLDIPISLAIPATFVVGLLCGFINAGLILYTKVNPLVI
CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCEEEEEECCCCEE
TLGTMYLFGGGALLLSGFAGATGYEGIGGFPESLLEFANQTLLGIPTPILYFILMTFIFW
HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
LLMHKTKIGRSIFLIGQSERTSRYSAVPIQKTLFLIYAFIGLVAAFVAVLLVSYFGSARS
HHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
DLGSSLLMPVLTAVVLGGANIYGGSGSIIGTAIAALLIGYLQQGLQMIGIPNEISSALSG
HHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ALLIIVLIGKSVSLHYGAMMQWIRRKAKHQAVVD
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA