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The map label for this gene is nrfF [H]

Identifier: 148826416

GI number: 148826416

Start: 1450415

End: 1451569

Strand: Direct

Name: nrfF [H]

Synonym: CGSHiEE_07295

Alternate gene names: 148826416

Gene position: 1450415-1451569 (Clockwise)

Preceding gene: 148826415

Following gene: 148826417

Centisome position: 80.0

GC content: 37.58

Gene sequence:

>1155_bases
ATGAAAAGCATATTAGATATTTTTACTCGCGGTTTTATTCAGGTTCAAAAAACAGTCTTTTTTGCAACCGCACTTTTATT
CGCATTTTCCTTATTCGCCCAAGCGGAAATGGTGGATACCTATCAATTTCAAAATCAAGATGATCGTACTCGCGCCGTAG
AGTTGGCAAAATCTTTACGCTGTCCACAATGTCAGAACCAAAATTTGGTGGAATCTAATTCTCCAATTGCTTATGACTTG
CGTCTTGAAGTGTACAAAATGGTGGATGAGGGCAAAAGTAATCAGCAAATTATCGATCAAATGACGGCTAGATTTGGTGA
TTTTGTGAATTACAAACCGCCATTCAAATGGAATACGGCGTTGTTATGGTTATTGCCAGTCGCCCTTTTAATTCTAGCTG
CAGTATTGCTTTATTTCTCAAATAGGAAAAAACAGTTTTCAGAAAAAGTGGTTGCACAACAACTAGAGAATGATGAAATA
ATTTCCCTCCCCTCAACCTTTGGCAGCTCCCCCCGCAAGCAAGGGGAGCCAAGTAAACTTTCTAAGAGAAAAGTGAATAG
CAAAATTTATTTTGTGCTTTTTACTTTACTCATCGCTATTCCAACTGCTTATTATTTTTCTCTTGATCGTTTTAGTCGTG
TTCAACAAGGCGAGCAATCGATGATTGAGCAACATAATCAAAATGTTGAAATGAATGATGAACACAAAAATCAAAATGTG
ATTGAGAAGATCCAAAATAAACTGCGTATCGATCCAAATAATGCGGAAACTTGGCTTCAACTTGGGGAAGCCTATGTGCA
AAATAATGAATTTAATAGTGCGCTTGTGGCTTATTCTAATGCGGAAAAATTGTCAGGCAGTAAACCTAATATTTTAGGTT
TGGCAGCCACCGCACTTTATTATCAAGCAGGCCAGCAAATGACCCCAAAAGTCGAACAACTTTTGAATGAAGCTTTGGCA
AAAGATAAAAATGAAGTATCTAGTCTTTCTTTGTTGGCGACAATTGCCTTAGAAAATCGCCAATATCAACAAGCTGGTAT
GTATTTACAGCAGTTATTAGATTCAGGTAATGCGGCAGTGGATCGTCGTTCAGTTATTCAACGAATGAAGATGTTGGATT
TTTTACAACGTGGTGAAAAAGGACAAAATCCGTGA

Upstream 100 bases:

>100_bases
TGGATGAAAATGGTGTGATTCGTTACCGCCATTCTGGTTTACTGGATAAAGAAACTTGGCAAACAGTATTTTTGCCGAAA
ATTAAAGCATTGAAGAACAA

Downstream 100 bases:

>100_bases
GCCAATATTCTGAAAACATTATTATTGGTGCGGGTGCGGCAGGATTATTTTGTGCCGCACAATTGGCTAAGCTAGGCAAG
TCGGTGACAGTTTTCGACAA

Product: cytochrome C-type biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MKSILDIFTRGFIQVQKTVFFATALLFAFSLFAQAEMVDTYQFQNQDDRTRAVELAKSLRCPQCQNQNLVESNSPIAYDL
RLEVYKMVDEGKSNQQIIDQMTARFGDFVNYKPPFKWNTALLWLLPVALLILAAVLLYFSNRKKQFSEKVVAQQLENDEI
ISLPSTFGSSPRKQGEPSKLSKRKVNSKIYFVLFTLLIAIPTAYYFSLDRFSRVQQGEQSMIEQHNQNVEMNDEHKNQNV
IEKIQNKLRIDPNNAETWLQLGEAYVQNNEFNSALVAYSNAEKLSGSKPNILGLAATALYYQAGQQMTPKVEQLLNEALA
KDKNEVSSLSLLATIALENRQYQQAGMYLQQLLDSGNAAVDRRSVIQRMKMLDFLQRGEKGQNP

Sequences:

>Translated_384_residues
MKSILDIFTRGFIQVQKTVFFATALLFAFSLFAQAEMVDTYQFQNQDDRTRAVELAKSLRCPQCQNQNLVESNSPIAYDL
RLEVYKMVDEGKSNQQIIDQMTARFGDFVNYKPPFKWNTALLWLLPVALLILAAVLLYFSNRKKQFSEKVVAQQLENDEI
ISLPSTFGSSPRKQGEPSKLSKRKVNSKIYFVLFTLLIAIPTAYYFSLDRFSRVQQGEQSMIEQHNQNVEMNDEHKNQNV
IEKIQNKLRIDPNNAETWLQLGEAYVQNNEFNSALVAYSNAEKLSGSKPNILGLAATALYYQAGQQMTPKVEQLLNEALA
KDKNEVSSLSLLATIALENRQYQQAGMYLQQLLDSGNAAVDRRSVIQRMKMLDFLQRGEKGQNP
>Mature_384_residues
MKSILDIFTRGFIQVQKTVFFATALLFAFSLFAQAEMVDTYQFQNQDDRTRAVELAKSLRCPQCQNQNLVESNSPIAYDL
RLEVYKMVDEGKSNQQIIDQMTARFGDFVNYKPPFKWNTALLWLLPVALLILAAVLLYFSNRKKQFSEKVVAQQLENDEI
ISLPSTFGSSPRKQGEPSKLSKRKVNSKIYFVLFTLLIAIPTAYYFSLDRFSRVQQGEQSMIEQHNQNVEMNDEHKNQNV
IEKIQNKLRIDPNNAETWLQLGEAYVQNNEFNSALVAYSNAEKLSGSKPNILGLAATALYYQAGQQMTPKVEQLLNEALA
KDKNEVSSLSLLATIALENRQYQQAGMYLQQLLDSGNAAVDRRSVIQRMKMLDFLQRGEKGQNP

Specific function: Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=356, Percent_Identity=24.7191011235955, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1790512, Length=91, Percent_Identity=53.8461538461538, Blast_Score=111, Evalue=9e-26,
Organism=Escherichia coli, GI1790513, Length=137, Percent_Identity=36.4963503649635, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR017565
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 43829; Mature: 43829

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION ; PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSILDIFTRGFIQVQKTVFFATALLFAFSLFAQAEMVDTYQFQNQDDRTRAVELAKSLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
CPQCQNQNLVESNSPIAYDLRLEVYKMVDEGKSNQQIIDQMTARFGDFVNYKPPFKWNTA
CCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHH
LLWLLPVALLILAAVLLYFSNRKKQFSEKVVAQQLENDEIISLPSTFGSSPRKQGEPSKL
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEECCHHCCCCCCCCCCCHHH
SKRKVNSKIYFVLFTLLIAIPTAYYFSLDRFSRVQQGEQSMIEQHNQNVEMNDEHKNQNV
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
IEKIQNKLRIDPNNAETWLQLGEAYVQNNEFNSALVAYSNAEKLSGSKPNILGLAATALY
HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHEEECCHHHCCCCCCCHHHHHHHHHH
YQAGQQMTPKVEQLLNEALAKDKNEVSSLSLLATIALENRQYQQAGMYLQQLLDSGNAAV
HHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCH
DRRSVIQRMKMLDFLQRGEKGQNP
HHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKSILDIFTRGFIQVQKTVFFATALLFAFSLFAQAEMVDTYQFQNQDDRTRAVELAKSLR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
CPQCQNQNLVESNSPIAYDLRLEVYKMVDEGKSNQQIIDQMTARFGDFVNYKPPFKWNTA
CCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHH
LLWLLPVALLILAAVLLYFSNRKKQFSEKVVAQQLENDEIISLPSTFGSSPRKQGEPSKL
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEECCHHCCCCCCCCCCCHHH
SKRKVNSKIYFVLFTLLIAIPTAYYFSLDRFSRVQQGEQSMIEQHNQNVEMNDEHKNQNV
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
IEKIQNKLRIDPNNAETWLQLGEAYVQNNEFNSALVAYSNAEKLSGSKPNILGLAATALY
HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHEEECCHHHCCCCCCCHHHHHHHHHH
YQAGQQMTPKVEQLLNEALAKDKNEVSSLSLLATIALENRQYQQAGMYLQQLLDSGNAAV
HHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCH
DRRSVIQRMKMLDFLQRGEKGQNP
HHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]