Click here to switch to the map view.

The map label for this gene is yrbE [C]

Identifier: 148826300

GI number: 148826300

Start: 1314907

End: 1315692

Strand: Direct

Name: yrbE [C]

Synonym: CGSHiEE_06635

Alternate gene names: 148826300

Gene position: 1314907-1315692 (Clockwise)

Preceding gene: 148826299

Following gene: 148826301

Centisome position: 72.53

GC content: 39.69

Gene sequence:

>786_bases
ATGATCGTCAATTTTATTTCTGCTTTAGGAAAACAGGTGATCGACTTTTTCCGTGCATTGGGGCGAGCAGGCTTTATGTT
ATTTGGTGCATTGATCGGCAAGCCACAAATTCGTAAGCATTTTCCTTTGCTTGTGAAGCAAATGCATGTTTTAGGTGTCC
AATCGTTACTCATTATTTTGTTGTCCGGTTTATTTATTGGAATGGTATTAGGACTACAAGGTTATGTCGTATTAGTTGAT
TTTTCTGCTGAAACAAGTTTAGGTCAGTTAGTGGCACTTTCTCTTTTGAGAGAATTAGGCCCTGTTGTTACCGCACTTTT
ATTTGCTGGTCGAGCTGGTTCGGCTTTAACAGCTGAAATAGGCTTAATGAAAGCCACTGAACAACTTTCTAGTCTTGAAA
TGATGGCTGTTGATCCTTTACGTCGAGTGATTGCACCTCGTTTTTGGGCAGGGGTTATTTCCATGCCAATTTTGTCAATC
TTGTTTATCGCGATTGGTATTTGGGGCGGTTCCTTAGTAGGTGTGGATTGGAAAGGTGTTGATTCAGGCAGCTTTTGGTC
TGTTATGCAAAATTCCGTGAGTTGGAGCTATGATATTTTAAATGGCTTTATTAAAGCGGTTTTCTTTGCTGTAGCCGTAA
CTTGGATTGCGCTTTTTAATGGTTATGATTGTATGCCAACATCAGAAGGTATCAGCCAAGCTACAACACGAACAGTTGTG
CACGCTTCACTTGTTGTTCTAGGATTAGATTTTATTTTGACTGCTATTATGTTTGGTGCAAGTTAA

Upstream 100 bases:

>100_bases
AAAGCCAAGATCCGCGAGTGGTGCAATTCTTAAAAGGTGAATCTGATGGTCCTGTGCGCTTTAAGTACCCAGCGCAAGAT
TATATGAAGGAATTGTTTGA

Downstream 100 bases:

>100_bases
GGATTTTTTATGAGACAAACAATTAAATATGAATTTTGGGTCGGGTTATTTTTATTACTTGGTATTGGTGCCTTAGTTTT
TTTAGGTTTACGCGTAGCTA

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MIVNFISALGKQVIDFFRALGRAGFMLFGALIGKPQIRKHFPLLVKQMHVLGVQSLLIILLSGLFIGMVLGLQGYVVLVD
FSAETSLGQLVALSLLRELGPVVTALLFAGRAGSALTAEIGLMKATEQLSSLEMMAVDPLRRVIAPRFWAGVISMPILSI
LFIAIGIWGGSLVGVDWKGVDSGSFWSVMQNSVSWSYDILNGFIKAVFFAVAVTWIALFNGYDCMPTSEGISQATTRTVV
HASLVVLGLDFILTAIMFGAS

Sequences:

>Translated_261_residues
MIVNFISALGKQVIDFFRALGRAGFMLFGALIGKPQIRKHFPLLVKQMHVLGVQSLLIILLSGLFIGMVLGLQGYVVLVD
FSAETSLGQLVALSLLRELGPVVTALLFAGRAGSALTAEIGLMKATEQLSSLEMMAVDPLRRVIAPRFWAGVISMPILSI
LFIAIGIWGGSLVGVDWKGVDSGSFWSVMQNSVSWSYDILNGFIKAVFFAVAVTWIALFNGYDCMPTSEGISQATTRTVV
HASLVVLGLDFILTAIMFGAS
>Mature_261_residues
MIVNFISALGKQVIDFFRALGRAGFMLFGALIGKPQIRKHFPLLVKQMHVLGVQSLLIILLSGLFIGMVLGLQGYVVLVD
FSAETSLGQLVALSLLRELGPVVTALLFAGRAGSALTAEIGLMKATEQLSSLEMMAVDPLRRVIAPRFWAGVISMPILSI
LFIAIGIWGGSLVGVDWKGVDSGSFWSVMQNSVSWSYDILNGFIKAVFFAVAVTWIALFNGYDCMPTSEGISQATTRTVV
HASLVVLGLDFILTAIMFGAS

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG0767

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaE permease family [H]

Homologues:

Organism=Escherichia coli, GI1789585, Length=259, Percent_Identity=72.5868725868726, Blast_Score=392, Evalue=1e-111,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003453 [H]

Pfam domain/function: PF02405 DUF140 [H]

EC number: NA

Molecular weight: Translated: 28046; Mature: 28046

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]