Click here to switch to the map view.

The map label for this gene is ymfK [C]

Identifier: 148825949

GI number: 148825949

Start: 961018

End: 961674

Strand: Direct

Name: ymfK [C]

Synonym: CGSHiEE_04620

Alternate gene names: 148825949

Gene position: 961018-961674 (Clockwise)

Preceding gene: 148825943

Following gene: 148825950

Centisome position: 53.01

GC content: 41.86

Gene sequence:

>657_bases
ATGGCTACACTTGGCGAAAGAATAAAAGCGTATCGAGAACAGTTAAAAATCAGTCAAAAAGAATTAGCTGAGAGATGCAA
TAATATTGATACCAAAAGTGAGAATGCGCGTTGGGGACAACCGAGAATTGCTAATTATGAAAAAGGCAATAGAACGCCTG
ACCTCGAAGATATATCTATCATAAGTAAAGCACTTAATATCCTGCCTGAGGTTTTAGCCTTCGATTCAAACATAAGCGAG
ATCAAAGAGTCAATTTGTCGTTATCCATTATTAAGCCCAATCCAAGCAGGACTATGGACTGATATTAGATCGCTCGAAGG
ATTTGACGGTTACGAGATGATCCCAAGCACTGCCATCGCCTCTGAAAATTCCTTTTATCTACGAATTGAAGGGAAATCTA
TGCTCCCCCGATTCAACGAGGGCGATCTGGTTTTAATCGATCCTGATATTGTGCCAACGCCAGGAAAATTCGTGGCAGCA
ATTAATGGCGACAACGAGGCAACATTTAAACAATACAGAGAGCTTGGCACGAAAACACCAGAAGGCATACCGCACTTTGA
GCTTGTTCCGCTTAATCCAATGTTCCCAACATTAAGCTCACTCAACCAAGAGATCCGCATTATTGGTGTGGCAAGAGAGC
GTGTAGAAACGTTATAG

Upstream 100 bases:

>100_bases
TCTATTTAATCACATAATGCAATTTCTATCAATCACAAATTGAAATTATCTAAATATAACGTAACGTGTTATTATTTGAA
CTAAAAGAAGGAGAAATTAA

Downstream 100 bases:

>100_bases
TGCGGCGTGTAATGTGGGCTTAACTGGTTGTAAGTAAATATATTTTCAATGATATTAGAGGTAAGAAATGAATAAACAAG
TTAAATTGCGCGCTTTTAGT

Product: putative prophage repressor CI

Products: NA

Alternate protein names: Phage Repressor; Peptidase; Prophage Repressor; LexA Family Repressor/S24 Family Protease; Repressor; LexA Repressor; Cro/Cl Family Transcriptional Regulator; E14 Prophage; Prophage Repressor CI; Repressor Domain-Containing Protein; Helix-Turn-Helix Family; Repressor V; Bacteriophage-Related Transcriptional Repressor; SOS-Response Transcriptional Repressor

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MATLGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGNRTPDLEDISIISKALNILPEVLAFDSNISE
IKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMIPSTAIASENSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAA
INGDNEATFKQYRELGTKTPEGIPHFELVPLNPMFPTLSSLNQEIRIIGVARERVETL

Sequences:

>Translated_218_residues
MATLGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGNRTPDLEDISIISKALNILPEVLAFDSNISE
IKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMIPSTAIASENSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAA
INGDNEATFKQYRELGTKTPEGIPHFELVPLNPMFPTLSSLNQEIRIIGVARERVETL
>Mature_217_residues
ATLGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGNRTPDLEDISIISKALNILPEVLAFDSNISEI
KESICRYPLLSPIQAGLWTDIRSLEGFDGYEMIPSTAIASENSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAAI
NGDNEATFKQYRELGTKTPEGIPHFELVPLNPMFPTLSSLNQEIRIIGVARERVETL

Specific function: Unknown

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24540; Mature: 24409

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGNRTPDLEDISI
CCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
ISKALNILPEVLAFDSNISEIKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMIPSTAIA
HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCHHEE
SENSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAAINGDNEATFKQYRELGTKTP
CCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCC
EGIPHFELVPLNPMFPTLSSLNQEIRIIGVARERVETL
CCCCCEEEEECCCCHHHHHHCCCEEEEEEHHHHHHHCC
>Mature Secondary Structure 
ATLGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGNRTPDLEDISI
CCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
ISKALNILPEVLAFDSNISEIKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMIPSTAIA
HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCHHEE
SENSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAAINGDNEATFKQYRELGTKTP
CCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCC
EGIPHFELVPLNPMFPTLSSLNQEIRIIGVARERVETL
CCCCCEEEEECCCCHHHHHHCCCEEEEEEHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA