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The map label for this gene is rimM [H]

Identifier: 148825533

GI number: 148825533

Start: 439851

End: 440378

Strand: Direct

Name: rimM [H]

Synonym: CGSHiEE_02230

Alternate gene names: 148825533

Gene position: 439851-440378 (Clockwise)

Preceding gene: 148825532

Following gene: 148825534

Centisome position: 24.26

GC content: 36.55

Gene sequence:

>528_bases
ATGGAACAACAACATATTGAAGTTGTGGGCAAATTAGGCTCAACCTACGGTATTCGTGGGTGGTTGCGTATTTATTCATC
AACAGAACAAGCTGAAAGCATTTTTGATTATCAACCTTGGTTTTTAAAAATCAAAGGCGAATGGCAATCAATTGAATTAG
AAAACTGGCGTTATCATAATCACGAAATCATCGTTAAATTAAAAGGCGTTGATGACCGTGAAGCTGCACAAATTTTAGCG
AATGTTGAAATTGGTGTAGATTTATCTGTTTTCCCAGAACTAGAAGAGGGCGATTATTACTGGCACGATTTAATCGGTTG
TACAGTCGTAAACTTAGAAGGTTATACAATGGGAACAGTAACAGAAATGATGGAAACGGGTTCTAATGATGTATTAGTAG
TTAAAGCCAATACCAAAGATGCTTTTGGAAAACAAGAGCGGTTAATTCCGTTTTTGTATGAACAAGTAGTTAAAAGAGTC
GATCTCACCACAAAAACAATTGAAGTGGATTGGGACGCTGGTTTCTAA

Upstream 100 bases:

>100_bases
TTCACTTTCTGATCGTGTTGCGAGCTTGGTAAAAGAAGCACAAAAAGCAGCATAATTTTGCTTTTTGATTTAGTTCTCAA
ACTTAAGATAGGTGAAAAAT

Downstream 100 bases:

>100_bases
TCTCAAGTATGCACAAACGTAATGTAGTAGGCTTTTTATGTGGATAGGGGTAATTTCATTATTCCCCGAAATGTTTAAAG
CGATTACGGAATTTGGGGTT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MEQQHIEVVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQSIELENWRYHNHEIIVKLKGVDDREAAQILA
NVEIGVDLSVFPELEEGDYYWHDLIGCTVVNLEGYTMGTVTEMMETGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRV
DLTTKTIEVDWDAGF

Sequences:

>Translated_175_residues
MEQQHIEVVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQSIELENWRYHNHEIIVKLKGVDDREAAQILA
NVEIGVDLSVFPELEEGDYYWHDLIGCTVVNLEGYTMGTVTEMMETGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRV
DLTTKTIEVDWDAGF
>Mature_175_residues
MEQQHIEVVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQSIELENWRYHNHEIIVKLKGVDDREAAQILA
NVEIGVDLSVFPELEEGDYYWHDLIGCTVVNLEGYTMGTVTEMMETGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRV
DLTTKTIEVDWDAGF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=168, Percent_Identity=68.4523809523809, Blast_Score=259, Evalue=6e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 20198; Mature: 20198

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQQHIEVVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQSIELENWRYHN
CCCHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHCCCCCEEEEEECCEEEEEECCCEEEC
HEIIVKLKGVDDREAAQILANVEIGVDLSVFPELEEGDYYWHDLIGCTVVNLEGYTMGTV
EEEEEEEECCCCHHHHHHHEEEEECCEEEECCCCCCCCEEEEECCCEEEEEECCCCHHHH
TEMMETGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVDWDAGF
HHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC
>Mature Secondary Structure
MEQQHIEVVGKLGSTYGIRGWLRIYSSTEQAESIFDYQPWFLKIKGEWQSIELENWRYHN
CCCHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHCCCCCEEEEEECCEEEEEECCCEEEC
HEIIVKLKGVDDREAAQILANVEIGVDLSVFPELEEGDYYWHDLIGCTVVNLEGYTMGTV
EEEEEEEECCCCHHHHHHHEEEEECCEEEECCCCCCCCEEEEECCCEEEEEECCCCHHHH
TEMMETGSNDVLVVKANTKDAFGKQERLIPFLYEQVVKRVDLTTKTIEVDWDAGF
HHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA