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The map label for this gene is pal

Identifier: 148825337

GI number: 148825337

Start: 210716

End: 211177

Strand: Direct

Name: pal

Synonym: CGSHiEE_01095

Alternate gene names: 148825337

Gene position: 210716-211177 (Clockwise)

Preceding gene: 148825336

Following gene: 148825338

Centisome position: 11.62

GC content: 39.61

Gene sequence:

>462_bases
ATGAACAAATTTGTTAAATCATTATTAGTTGCAGGTTCTGTAGCTGCATTAGCAGCTTGTAGTTCATCTAACAACGATGC
TGCAGGAAATGGTGCTGCTCAAACTTTTGGCGGTTACTCTGTTGCTGATCTTCAACAACGTTACAATACCGTTTATTTCG
GTTTTGATAAATATGACATTACTGGTGAATACGTTCAAATCTTAGACGCACACGCTGCATATTTAAATGCAACGCCAGCT
GCTAAAGTATTAGTAGAAGGTAACACTGATGAACGTGGTACACCAGAATACAACATCGCATTAGGCCAACGTCGTGCAGA
TGCAGTTAAAGGTTATTTAGCTGGTAAAGGTGTTGATGCTGGTAAATTAGGCACAGTATCTTACGGTGAAGAAAAACCTG
CAGTATTAGGTCATGATGAAGCTGCATATTCTAAAAACCGTCGTGCAGTGTTAGCGTACTAA

Upstream 100 bases:

>100_bases
GTCGCTTTAAGGCGAGCCTTCCAGGAAGTGATGGTCAAGTTAAATTTCCAGCTTGGTCTCCATACTTAACTAAATAAAAA
ACTCATTTAGGAGAAATCTA

Downstream 100 bases:

>100_bases
TTCTTAGTATTTCTAATACTTGAAAAACAGGATCCATTTTTTATTGGATCCTGTTTTGTTTTCATCGTTTGTAATTTAAC
CAATTAGCTTGAAAGAATGA

Product: outer membrane protein P6

Products: NA

Alternate protein names: OMP P6; 15 kDa peptidoglycan-associated lipoprotein; PC protein

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MNKFVKSLLVAGSVAALAACSSSNNDAAGNGAAQTFGGYSVADLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPA
AKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY

Sequences:

>Translated_153_residues
MNKFVKSLLVAGSVAALAACSSSNNDAAGNGAAQTFGGYSVADLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPA
AKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY
>Mature_153_residues
MNKFVKSLLVAGSVAALAACSSSNNDAAGNGAAQTFGGYSVADLQQRYNTVYFGFDKYDITGEYVQILDAHAAYLNATPA
AKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain

Homologues:

Organism=Escherichia coli, GI1786962, Length=172, Percent_Identity=52.9069767441861, Blast_Score=170, Evalue=4e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PAL_HAEIN (P10324)

Other databases:

- EMBL:   M19391
- EMBL:   M18878
- EMBL:   L42023
- PIR:   A28543
- RefSeq:   NP_438542.1
- PDB:   2AIZ
- PDBsum:   2AIZ
- ProteinModelPortal:   P10324
- SMR:   P10324
- GeneID:   949485
- GenomeReviews:   L42023_GR
- KEGG:   hin:HI0381
- TIGR:   HI_0381
- HOGENOM:   HBG751251
- OMA:   LKSNGNR
- ProtClustDB:   CLSK870313
- BioCyc:   HINF71421:HI_0381-MONOMER
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169
- Gene3D:   G3DSA:3.30.1330.60
- PRINTS:   PR01021
- TIGRFAMs:   TIGR02802

Pfam domain/function: PF00691 OmpA; SSF103088 OmpA/MotB_C

EC number: NA

Molecular weight: Translated: 16108; Mature: 16108

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01068 OMPA_1; PS51123 OMPA_2; PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKFVKSLLVAGSVAALAACSSSNNDAAGNGAAQTFGGYSVADLQQRYNTVYFGFDKYDI
CHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCHHCCCCCHHHHHHHCCEEEECCCCCCC
TGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDA
CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCC
GKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY
CCCCCCCCCCCCCCEECCCHHHHCCCCEEEEEC
>Mature Secondary Structure
MNKFVKSLLVAGSVAALAACSSSNNDAAGNGAAQTFGGYSVADLQQRYNTVYFGFDKYDI
CHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCHHCCCCCHHHHHHHCCEEEECCCCCCC
TGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDA
CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCCC
GKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY
CCCCCCCCCCCCCCEECCCHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2828309; 3257200; 7542800