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The map label for this gene is ydcM [C]

Identifier: 148825034

GI number: 148825034

Start: 4314564

End: 4315787

Strand: Reverse

Name: ydcM [C]

Synonym: TBFG_13861

Alternate gene names: 148825034

Gene position: 4315787-4314564 (Counterclockwise)

Preceding gene: 148825035

Following gene: 148825032

Centisome position: 97.54

GC content: 66.18

Gene sequence:

>1224_bases
ATGGCCAGATTCGAGGTGCCAGAAGGCTGGTGTGTGCAGGCGTTCCGGTTCACGCTGGACCCAACCGAGGACCAGGCCCG
CGCGCTGGCGCGGCATTTCGGCGCTCGCCGCAAGGCCTACAACTGGGCGGTCGCTACTTTGAAAGCCGATATCGAGGCGT
GGCGCGTTACTGGTATCGGGACTGTCAAGCCGTCGCTGCGGGTGCTTCGTAAACGGTGGAACACCGTCAAGGACGAGGTG
TGTGTCAACGCCGAGACCGGGGCGGTGTGGTGGCCGGAGTGCTCGAAAGAGGCTTACGCCGACGGCATTGGCGGCGCTGT
CGATGCGTACTGGAACTGGCAGAACTCCCGATCCGGTAAACGTGAGGGCAAGACAATGGGCTTCCCCCGGTTCAAGAAGA
AAGGCCGCGATCAGGACCGCGTGACATTCACGACCGGAGCGATGCGCGTCGAACCTGATCGCCGTCATCTCACACTTCCG
GTCGTCGGGACCGTCCGTACGCACGAGAACACACGCCGGATTGAACGGCTCATCGCCACAGGCCGGGCGCGGGTGCTGGC
AATCTCGGTGCGCCGTAACGGCACCCGGCTCGACGCCAGTGTGCGGGTCCTCGTGCAACGCCCGCAGCAGCCCAACGTGG
CACAGCCCGGTTCACGGGTTGGCGTTGACGTCGGGGTGCGCCGGCTGGCCACGGTCGCCAACGAGGCGGGCGCAGTGCTC
GAAGAAGTGCCCAATCCACGGCCACTCGACGCGGCACTCAAAGAGCTACGGTACGCCAGCCGTGCGCGGTCGCGGTGCAC
GAAAGGCTCACGGCGCTACCGCGAGCGCACCACCGAGATTTCCCGGCTGCATCGCCGGGTCAACGATGTCCGCACTCATC
ACCTGCATGTCCTGACAACACGATTGGCTCAAACCCACGGCCACATCGTTGTTGAAGGTTTGGACGCTGCGGGGATGCTG
CGGCAAAAGGGGCTTCCCGGCGCCCGCGCCCGCCGGCGCGGACTGTCGGACTCGGCCCTGGGCACTCCGCGCCGGCACTT
GTCCTACAAGACGGGCTGGTACGGGTCGGCGCTGGTGGTCGCCGACCGCTGGTTCCCGTCGTTAAGCGTGGAGCCGACCG
TAAGACCGGGCCTTGCCCGGCTGGTGGCTGTGAAGCGCGGAAGGGAGGCAGCCGCATGGCTGCCGAACAACCCCGAGACG
GGGTGCAAGTCGCGTGACCACTAA

Upstream 100 bases:

>100_bases
TCCTGACCTCGATGTGTGCTCGGCTCTATGGTGAACGCGCTGCACAGAACGGGGCCAAGCGTGCCCTTGCTGCTGCGGTC
GGGGACGCGGAGGCAGCTTG

Downstream 100 bases:

>100_bases
AGATCGCTCGCTTGCAACGGCTTAGCGTCCAACCGGGTGAACTCGTTGTGTCGATACAGCTTCACACACTCGGCACGTCT
GACCTTGCCGCTCGTGGTGA

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MARFEVPEGWCVQAFRFTLDPTEDQARALARHFGARRKAYNWAVATLKADIEAWRVTGIGTVKPSLRVLRKRWNTVKDEV
CVNAETGAVWWPECSKEAYADGIGGAVDAYWNWQNSRSGKREGKTMGFPRFKKKGRDQDRVTFTTGAMRVEPDRRHLTLP
VVGTVRTHENTRRIERLIATGRARVLAISVRRNGTRLDASVRVLVQRPQQPNVAQPGSRVGVDVGVRRLATVANEAGAVL
EEVPNPRPLDAALKELRYASRARSRCTKGSRRYRERTTEISRLHRRVNDVRTHHLHVLTTRLAQTHGHIVVEGLDAAGML
RQKGLPGARARRRGLSDSALGTPRRHLSYKTGWYGSALVVADRWFPSLSVEPTVRPGLARLVAVKRGREAAAWLPNNPET
GCKSRDH

Sequences:

>Translated_407_residues
MARFEVPEGWCVQAFRFTLDPTEDQARALARHFGARRKAYNWAVATLKADIEAWRVTGIGTVKPSLRVLRKRWNTVKDEV
CVNAETGAVWWPECSKEAYADGIGGAVDAYWNWQNSRSGKREGKTMGFPRFKKKGRDQDRVTFTTGAMRVEPDRRHLTLP
VVGTVRTHENTRRIERLIATGRARVLAISVRRNGTRLDASVRVLVQRPQQPNVAQPGSRVGVDVGVRRLATVANEAGAVL
EEVPNPRPLDAALKELRYASRARSRCTKGSRRYRERTTEISRLHRRVNDVRTHHLHVLTTRLAQTHGHIVVEGLDAAGML
RQKGLPGARARRRGLSDSALGTPRRHLSYKTGWYGSALVVADRWFPSLSVEPTVRPGLARLVAVKRGREAAAWLPNNPET
GCKSRDH
>Mature_406_residues
ARFEVPEGWCVQAFRFTLDPTEDQARALARHFGARRKAYNWAVATLKADIEAWRVTGIGTVKPSLRVLRKRWNTVKDEVC
VNAETGAVWWPECSKEAYADGIGGAVDAYWNWQNSRSGKREGKTMGFPRFKKKGRDQDRVTFTTGAMRVEPDRRHLTLPV
VGTVRTHENTRRIERLIATGRARVLAISVRRNGTRLDASVRVLVQRPQQPNVAQPGSRVGVDVGVRRLATVANEAGAVLE
EVPNPRPLDAALKELRYASRARSRCTKGSRRYRERTTEISRLHRRVNDVRTHHLHVLTTRLAQTHGHIVVEGLDAAGMLR
QKGLPGARARRRGLSDSALGTPRRHLSYKTGWYGSALVVADRWFPSLSVEPTVRPGLARLVAVKRGREAAAWLPNNPETG
CKSRDH

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=245, Percent_Identity=28.9795918367347, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 45722; Mature: 45591

Theoretical pI: Translated: 11.75; Mature: 11.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARFEVPEGWCVQAFRFTLDPTEDQARALARHFGARRKAYNWAVATLKADIEAWRVTGIG
CCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEECCC
TVKPSLRVLRKRWNTVKDEVCVNAETGAVWWPECSKEAYADGIGGAVDAYWNWQNSRSGK
CCCHHHHHHHHHHCCHHHHEEECCCCCEEECCCCCHHHHHCCCCCCEEEEECCCCCCCCC
REGKTMGFPRFKKKGRDQDRVTFTTGAMRVEPDRRHLTLPVVGTVRTHENTRRIERLIAT
CCCCCCCCCHHHHCCCCCCCEEEEECCEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHC
GRARVLAISVRRNGTRLDASVRVLVQRPQQPNVAQPGSRVGVDVGVRRLATVANEAGAVL
CCCEEEEEEEECCCCCCCHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
EEVPNPRPLDAALKELRYASRARSRCTKGSRRYRERTTEISRLHRRVNDVRTHHLHVLTT
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLAQTHGHIVVEGLDAAGMLRQKGLPGARARRRGLSDSALGTPRRHLSYKTGWYGSALVV
HHHHCCCCEEEECCCHHHHHHHCCCCCHHHHHCCCCCCCCCCCHHHCCCCCCCCCCEEEE
ADRWFPSLSVEPTVRPGLARLVAVKRGREAAAWLPNNPETGCKSRDH
EECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARFEVPEGWCVQAFRFTLDPTEDQARALARHFGARRKAYNWAVATLKADIEAWRVTGIG
CCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEECCC
TVKPSLRVLRKRWNTVKDEVCVNAETGAVWWPECSKEAYADGIGGAVDAYWNWQNSRSGK
CCCHHHHHHHHHHCCHHHHEEECCCCCEEECCCCCHHHHHCCCCCCEEEEECCCCCCCCC
REGKTMGFPRFKKKGRDQDRVTFTTGAMRVEPDRRHLTLPVVGTVRTHENTRRIERLIAT
CCCCCCCCCHHHHCCCCCCCEEEEECCEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHC
GRARVLAISVRRNGTRLDASVRVLVQRPQQPNVAQPGSRVGVDVGVRRLATVANEAGAVL
CCCEEEEEEEECCCCCCCHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
EEVPNPRPLDAALKELRYASRARSRCTKGSRRYRERTTEISRLHRRVNDVRTHHLHVLTT
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLAQTHGHIVVEGLDAAGMLRQKGLPGARARRRGLSDSALGTPRRHLSYKTGWYGSALVV
HHHHCCCCEEEECCCHHHHHHHCCCCCHHHHHCCCCCCCCCCCHHHCCCCCCCCCCEEEE
ADRWFPSLSVEPTVRPGLARLVAVKRGREAAAWLPNNPETGCKSRDH
EECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]