Click here to switch to the map view.

The map label for this gene is ydeB [H]

Identifier: 148824789

GI number: 148824789

Start: 4037837

End: 4038325

Strand: Reverse

Name: ydeB [H]

Synonym: TBFG_13616

Alternate gene names: 148824789

Gene position: 4038325-4037837 (Counterclockwise)

Preceding gene: 148824793

Following gene: 148824788

Centisome position: 91.27

GC content: 58.9

Gene sequence:

>489_bases
ATGATTTTCAAGGTCGGAGACACCGTTGTCTATCCACACCACGGTGCTGCGTTAGTCGAGGCGATCGAAACCCGGACCAT
CAAAGGGGAACAAAAAGAGTATCTCGTCTTGAAAGTTGCGCAGGGCGACCTGACAGTACGAGTTCCCGCTGAAAACGCCG
AATACGTCGGTGTTCGCGATGTCGTCGGGCAGGAAGGCCTGGACAAGGTTTTCCAGGTGTTGCGTGCCCCGCACACCGAG
GAGCCGACGAACTGGTCACGTCGTTACAAGGCGAACCTCGAGAAACTCGCATCCGGCGATGTGAACAAGGTGGCCGAGGT
AGTGCGCGATTTGTGGCGTCGCGACCAGGAGCGTGGCTTGTCGGCCGGTGAGAAGCGCATGCTGGCCAAGGCCCGGCAGA
TTCTGGTCGGCGAGTTGGCGTTGGCTGAGAGCACCGATGACGCCAAAGCCGAGACCATCCTTGACGAGGTTTTAGCCGCC
GCGTCTTGA

Upstream 100 bases:

>100_bases
AACCCCCAATCTTCCCGCGCTATGCCCCTGACCTGCACCGTTGTTCGGCGCCCGTTAGGGCCCCGTGTTAGCATGGAGTA
ACGAAAGGGGCTCAAATCAG

Downstream 100 bases:

>100_bases
CCGCCCTGAGGCTCTAGTGGTCAGGGAAGCGGGCGAAGTAGTTGCGATCGTCCCGGCTGCGGGGTCGGGGGAGCGGTTGG
CCGTCGGTGTGCCCAAGGCG

Product: transcription factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVVGQEGLDKVFQVLRAPHTE
EPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA
AS

Sequences:

>Translated_162_residues
MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVVGQEGLDKVFQVLRAPHTE
EPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA
AS
>Mature_162_residues
MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVVGQEGLDKVFQVLRAPHTE
EPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAA
AS

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 17908; Mature: 17908

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD
CEEECCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCHHH
VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL
HHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRD
CEEECCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCHHH
VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL
HHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
SAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]