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The map label for this gene is lytR [H]

Identifier: 148824692

GI number: 148824692

Start: 3915431

End: 3916969

Strand: Direct

Name: lytR [H]

Synonym: TBFG_13519

Alternate gene names: 148824692

Gene position: 3915431-3916969 (Clockwise)

Preceding gene: 148824687

Following gene: 148824694

Centisome position: 88.5

GC content: 65.76

Gene sequence:

>1539_bases
ATGGCGCGTTCTGAGGGCAATCGCCCACGCCATCGCGCTGTGCCTCAGCCGTCGCGGATCCGCAAGCGGCTGTCGCGGGG
CGTTATGACGCTCGTGTCGGTGGTTGCCCTGCTGATGACCGGCGCAGGGTATTGGGTAGCCCACGGCGCGCTGGGCGGCA
TCACCATTTCGCAGGCCCTAACCCCCGAGGATCCCCGTTCCAGCGGCAACAACATGAACATCTTGCTCATCGGGCTGGAC
TCGCGCAAAGACCAGGAAGGCAACGACCTGCCCTGGTCGGTCTTGAAGCAGCTACACGCGGGCGATTCCGACGACGGCGG
CTACAACACGAACACGCTGATACTTGTGCACGTCGGTGCCGATGGCAAAGTGGTGGCCTTCTCGATCCCCCGCGACGACT
GGGTGCCCTTCACCGGCGTTCCGGGATACAACCACATCAAGATCAAAGAGGCGTACGGGCTGACCAAGCAATACGTGGCA
GAACAGCTGGCCAACCAGGGTGTGAGCGACCGGAAAGAGCTCGAGACCCGGGGCCGTGAAGCTGCCCGGGCCGCGACCCT
GCGGGCGGTGCGAAGCCTGACCGGCGTCCCGATCGACTACTTCGCCGAGATCAATTTGGCCGGTTTCTACGATTTGGCCC
AGACCCTCGGCGGCGTTGATGTGTGCCTGAACCATGCCGTCTACGACTCGTACTCCGGAGCCGACTTCCCCGCCGGGCGT
CAACGGTTGAATGCCGCGCAGGCGCTGGCGTTTGTCCGGCAGCGTCATGGCCTAGACAACGGGGACCTGGACCGCACCCA
CCGCCAGCAAGCATTCCTGTCGTCGGTCATGCGCGAACTTCAGGATTCGGGCACCTTCACCAACCTGGACAGGCTCGACA
ACCTGATGGCCGTGGCACGCAAAGATGTGGTGCTGTCGGCCGGCTGGGACGAGGACCTGTTCCGCCGGATGGGCGACCTG
GCGGGCGGTAACGTCGAATTCCGGACGCTGCCCGTGGTGCGCTACGACAACATCGACGGCCAGGATGTCAACATTATCGA
CCCGACCGCGATCCGGGCCGAGGTAGCGGCGGCATTTGGCAGCGCGCCGCCAACGTCGCAGACCGCCGCGGCCGCCAAAC
CTAACCCATCCACCGTCGTCGATGTGGTCAATGCCGGCAGCATCAGCGGACTGGCCAGCCAGGTCTCCGGTGCGCTGCTG
AAGCGCGGCTACACCGCGGGTCAGGTGCGTGACCGCGAATCCGGCGATCCGTTCACCACCGCCATCGAGTACGGTGCCGG
CGCGGAAACGGACGCCCAGAACGTGGCAGACCTGCTCGGTATCGACGCCCCCAACCATCCCGATCCCGCCGTCGCGCCCG
GACACATCCGTGTGACGGTGGATACCAACTTCTCCCTACCGGCACCCGACGAGGCCACCGCCGCCGCGACGTCCACCGAA
ACCAGCACATATCCGCTGTACGGCGGCGGCACCACCACCGACCCGACACCGGACCAAGGGGCGCCCATCGATGGCGGCGG
CGTGCCCTGCGTGAACTAG

Upstream 100 bases:

>100_bases
CAGCAATCTGGCCCCATACTAGACGTCATGCAGCAAGCGACGGCACCGCAACCGCTGGCAGCGCGCCAGTTGGTTCGACG
GCGCCTGGCCGAGGCATATG

Downstream 100 bases:

>100_bases
GTAAGTTATCCGACCACTCCACGCAGCCCGTCGGCGCCGAACACCGGCTCCAGCATGGGCGAGAAGTCCGGGCCCCTTCG
CAGCATGTGGCCGCCGTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 512; Mature: 511

Protein sequence:

>512_residues
MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQALTPEDPRSSGNNMNILLIGLD
SRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGADGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVA
EQLANQGVSDRKELETRGREAARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR
QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDEDLFRRMGDL
AGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFGSAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALL
KRGYTAGQVRDRESGDPFTTAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTE
TSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN

Sequences:

>Translated_512_residues
MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQALTPEDPRSSGNNMNILLIGLD
SRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGADGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVA
EQLANQGVSDRKELETRGREAARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR
QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDEDLFRRMGDL
AGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFGSAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALL
KRGYTAGQVRDRESGDPFTTAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTE
TSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN
>Mature_511_residues
ARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQALTPEDPRSSGNNMNILLIGLDS
RKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGADGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAE
QLANQGVSDRKELETRGREAARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGRQ
RLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVARKDVVLSAGWDEDLFRRMGDLA
GGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFGSAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLK
RGYTAGQVRDRESGDPFTTAIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTET
STYPLYGGGTTTDPTPDQGAPIDGGGVPCVN

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 54355; Mature: 54224

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL
CCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEECCC
TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA
CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECC
DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE
CCEEEEEECCCCCCCCCCCCCCCCEEEEHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH
AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR
HHHHHHHHHHHHHCCCCHHHHEEECCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHH
QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG
HCEEEECCCCHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCEEECCHHHHHHHHHHHC
SAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTT
CCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
AIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTE
EEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHCCCCCC
TSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN
CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARSEGNRPRHRAVPQPSRIRKRLSRGVMTLVSVVALLMTGAGYWVAHGALGGITISQAL
CCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEECCC
TPEDPRSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHVGA
CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEECC
DGKVVAFSIPRDDWVPFTGVPGYNHIKIKEAYGLTKQYVAEQLANQGVSDRKELETRGRE
CCEEEEEECCCCCCCCCCCCCCCCEEEEHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH
AARAATLRAVRSLTGVPIDYFAEINLAGFYDLAQTLGGVDVCLNHAVYDSYSGADFPAGR
HHHHHHHHHHHHHCCCCHHHHEEECCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHH
QRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMRELQDSGTFTNLDRLDNLMAVAR
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
KDVVLSAGWDEDLFRRMGDLAGGNVEFRTLPVVRYDNIDGQDVNIIDPTAIRAEVAAAFG
HCEEEECCCCHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCEEECCHHHHHHHHHHHC
SAPPTSQTAAAAKPNPSTVVDVVNAGSISGLASQVSGALLKRGYTAGQVRDRESGDPFTT
CCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
AIEYGAGAETDAQNVADLLGIDAPNHPDPAVAPGHIRVTVDTNFSLPAPDEATAAATSTE
EEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHCCCCCC
TSTYPLYGGGTTTDPTPDQGAPIDGGGVPCVN
CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA