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The map label for this gene is yfdE [H]

Identifier: 148824474

GI number: 148824474

Start: 3665226

End: 3666410

Strand: Direct

Name: yfdE [H]

Synonym: TBFG_13301

Alternate gene names: 148824474

Gene position: 3665226-3666410 (Clockwise)

Preceding gene: 148824472

Following gene: 148824475

Centisome position: 82.84

GC content: 65.23

Gene sequence:

>1185_bases
ATGCCGACCAGCAACCCCGCCAAACCACTTGACGGGTTTCGGGTATTGGATTTCACCCAGAACGTGGCCGGGCCGCTGGC
CGGGCAGGTGCTGGTCGACCTGGGGGCTGAAGTCATCAAGGTGGAGGCGCCCGGCGGTGAAGCGGCCCGTCAGATCACCT
CGGTGTTACCCGGACGCCCGCCCCTGGCCACCTACTTTCTGCCCAACAATCGTGGCAAGAAGTCGGTGACGGTGGACCTA
ACCACCGAGCAGGCCAAGCAGCAGATGCTGCGGCTCGCGGACACCGCCGACGTTGTCTTGGAGGCGTTTCGGCCCGGCAC
CATGGAAAAGCTGGGCCTAGGCCCTGATGACTTGCGCTCTCGTAACCCCAACCTGATCTACGCGCGCCTAACCGCTTACG
GCGGCAACGGCCCGCACGGCAGCCGGCCGGGAATCGACCTGGTGGTGGCCGCCGAGGCCGGCATGACCACCGGAATGCCC
ACGCCTGAGGGCAAGCCACAGATCATCCCATTTCAGCTCGTCGACAACGCCAGCGGTCACGTGCTGGCCCAGGCCGTGCT
GGCCGCGCTGCTGCACCGCGAGCGGAACGGGGTGGCCGACGTCGTCCAGGTCGCGATGTACGACGTCGCGGTGGGACTAC
AAGCCAACCAGCTGATGATGCATCTCAATCGGGCCGCTAGCGACCAGCCGAAGCCTGAACCGGCACCGAAGGCCAAGCGG
CGCAAGGGAGTCGGCTTCGCTACCCAGCCATCGGACGCGTTTCGCACCGCCGATGGGTACATCGTCATCAGCGCATATGT
GCCCAAACACTGGCAGAAGCTGTGCTACCTCATCGGCCGGCCTGACCTCGTTGAAGATCAACGATTTGCCGAACAACGCT
CCCGGTCGATCAACTACGCCGAGTTGACCGCCGAGTTGGAATTGGCACTGGCCAGCAAGACCGCCACCGAATGGGTCCAG
TTGCTGCAGGCAAACGGCCTCATGGCCTGCCTCGCCCATACCTGGAAACAGGTCGTCGACACCCCCCTTTTCGCCGAGAA
CGACCTCACCCTGGAAGTCGGTCGCGGGGCGGACACCATCACGGTGATCCGCACACCGGCGCGCTACGCCAGCTTCCGCG
CGGTCGTCACCGATCCCCCGCCCACCGCCGGCGAACACAATGCCGTGTTTCTGGCCCGGCCCTGA

Upstream 100 bases:

>100_bases
CCCGACGATGGTAGAGGCAAGACATGCCGGGCGGTCGCCGCGGCGTCGCGAACCCGTATGGTTCAGGGAGGATGCCGCAC
GCCAGGGAAGGTCACCACCG

Downstream 100 bases:

>100_bases
CGCTGTGACCATTCCGAGGAGTCAACACATGAGCACCGCAGTCAACAGCTGCACCGAGGCGCCCGCATCGCGATCACAGT
GGATGCTGGCTAATCTGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLATYFLPNNRGKKSVTVDL
TTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMP
TPEGKPQIIPFQLVDNASGHVLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR
RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAELELALASKTATEWVQ
LLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTITVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP

Sequences:

>Translated_394_residues
MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLATYFLPNNRGKKSVTVDL
TTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMP
TPEGKPQIIPFQLVDNASGHVLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR
RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAELELALASKTATEWVQ
LLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTITVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP
>Mature_393_residues
PTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRPPLATYFLPNNRGKKSVTVDLT
TEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPT
PEGKPQIIPFQLVDNASGHVLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKRR
KGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYAELTAELELALASKTATEWVQL
LQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTITVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=395, Percent_Identity=29.620253164557, Blast_Score=171, Evalue=1e-42,
Organism=Homo sapiens, GI300863124, Length=421, Percent_Identity=28.0285035629454, Blast_Score=159, Evalue=4e-39,
Organism=Homo sapiens, GI300863126, Length=392, Percent_Identity=28.5714285714286, Blast_Score=150, Evalue=3e-36,
Organism=Homo sapiens, GI13376042, Length=421, Percent_Identity=25.1781472684086, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI266456254, Length=334, Percent_Identity=29.0419161676647, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI42794625, Length=334, Percent_Identity=29.0419161676647, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI266458393, Length=281, Percent_Identity=29.8932384341637, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI266458397, Length=267, Percent_Identity=30.3370786516854, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI42822893, Length=168, Percent_Identity=35.1190476190476, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI266458395, Length=168, Percent_Identity=35.1190476190476, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI87082093, Length=354, Percent_Identity=30.225988700565, Blast_Score=157, Evalue=8e-40,
Organism=Escherichia coli, GI1788717, Length=409, Percent_Identity=25.4278728606357, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1786222, Length=318, Percent_Identity=25.1572327044025, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI32564160, Length=325, Percent_Identity=24.6153846153846, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=358, Percent_Identity=24.5810055865922, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24648431, Length=380, Percent_Identity=30, Blast_Score=174, Evalue=1e-43,
Organism=Drosophila melanogaster, GI24585488, Length=318, Percent_Identity=31.7610062893082, Blast_Score=125, Evalue=7e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42459; Mature: 42328

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP
CCCCCCCCCCCCCEEEEHHHHHCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCC
PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS
CEEEEEECCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHC
RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH
CCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCH
VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA
HCCCCCCCCCCHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH
ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTI
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEE
TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP
EEEECCHHHHEEEEEEECCCCCCCCCCEEEEECC
>Mature Secondary Structure 
PTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAPGGEAARQITSVLPGRP
CCCCCCCCCCCCEEEEHHHHHCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCC
PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLADTADVVLEAFRPGTMEKLGLGPDDLRS
CEEEEEECCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHC
RNPNLIYARLTAYGGNGPHGSRPGIDLVVAAEAGMTTGMPTPEGKPQIIPFQLVDNASGH
CCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCH
VLAQAVLAALLHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHH
RKGVGFATQPSDAFRTADGYIVISAYVPKHWQKLCYLIGRPDLVEDQRFAEQRSRSINYA
HCCCCCCCCCCHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHH
ELTAELELALASKTATEWVQLLQANGLMACLAHTWKQVVDTPLFAENDLTLEVGRGADTI
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCEE
TVIRTPARYASFRAVVTDPPPTAGEHNAVFLARP
EEEECCHHHHEEEEEEECCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]