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The map label for this gene is lytR [H]

Identifier: 148824469

GI number: 148824469

Start: 3659666

End: 3661159

Strand: Direct

Name: lytR [H]

Synonym: TBFG_13296

Alternate gene names: 148824469

Gene position: 3659666-3661159 (Clockwise)

Preceding gene: 148824465

Following gene: 148824470

Centisome position: 82.71

GC content: 66.8

Gene sequence:

>1494_bases
ATGTCTGCGCAACGTGTGGTTCGTACGGTTCGTACCGCTCGGGCTATTTCCACGGCACTGGCCGTCGCGATCGTCCTTGG
CACCGGGGTGGCGTGGAGCAGTGTCCGGTCGTTCGAAGACGGCATCTTCCACATGTCGGCGCCCTCGCTGGGGCACGGCG
GCGACGACGGCGCGATCGACATTTTGCTGGTCGGCCTGGACAGCCGTACCGACGCGCACGGCAACCCGTTGAGCGCCGAG
GAATTGGCGACATTGCACGCCGGCGACGAGGAAGCCACCAACACCGACACCATCATCCTGATCCGGGTACCCAACAACGG
AAAGTCGGCGACCGCAATCTCTATACCGCGGGACTCCTACGTCGCGGCTCCCGGTCTGGGTAAGACCAAGATCAACGGCG
TCTACGGGCAAACCAGAGAGACCAAGCGGGCCGGCCTGGTCCAAGCCGGTGCCTCGCCGACCGAAGCGGCCGCCGCCGGC
ACCGAGGCCGGGCGTGAGGCGTTGATCAAGACGGTCGCCGATCTGACCGGCGTCACCGTCGACCACTACGCCGAGATCGG
GCTGCTCGGTTTCGCGTTGATCGCCGACGCACTCGGCGGCGTCGACGTCTGCCTCAAAGAGCCTGTATACGAACCACTTT
CGGGTGCCGATTTTCCAGCCGGGCGGCAAAAGCTCAACGGTCCGCAAGCGCTCAGCTTCGTTCGCCAGCGGCATGATCTG
CCCCGCGGCGACCTGGACCGGGTGGTACGTCAGCAGGCGGTGATGGCGGCGTTGGCCCACCGGGTCATCTCCGGACAGAC
GCTATCCAGCCCCGCCACGCTGAAGCGGTTGGAGCAGGCCGTGCAGCGCTCGGTGGTGCTGTCCTCCGGGTGGGACATCA
TGGATTTCGTCCGCCAATTGCAGAAGCTGGCCGGCGGTAACGTTGCCTTCGCCACCATCCCGGTGCTCGACGGCGCCGGC
TGGAGCGACGACGGCATGCAAAGCGTGGTGCGGGTGGATCCGCGTCAGGTGCAGGACTGGGTCGTCGGCCTGCTGCACGA
GCAGGACCAGGGCAAGACCGACGAGCTGGCCTACACACCCGCCAAGACCACGGCCAACGTGGTCAACGACACCGATATCA
ACGGGCTTGCGGCAGCGGTGTCAAAGGTGTTGAGCTCCAAGGGGTTTACCACCGGATCCGTCGGCAACAACGACGGCGAC
CACGTGCCTGGCAGCCAGGTGCGGGCCGCAAAGGCCGACGACCTGGGCGCACAGCAGGTCGCCAAGGAACTGGGCGGGTT
GCCGGTGGTCGCCGATGCGTCAATCGCGCCTGGGTCGGTGCGGGTGGTGCTGGCCAACGACTACAGCGGTCCGGGCTCCG
GGCTGGGGGGTAGTGATCCGAACGGCGTCGTATCGCCGGCCCGCGCGTTCAACCTCGGGTCCGCCGACGACACGACTCCC
CCGCCGTCGCCAATCCTTACCGCCGGCTCCGACGCGCCGGAGTGCATCAACTGA

Upstream 100 bases:

>100_bases
GCCTTTCTGACCTGCCCGCCATGTGTTTGAGTCTGGCACGCCTCGGGCACGCCGGGGTTGGCTACCCGACAGGGCGCCGT
TACACAAGTAGTCTAGTGTG

Downstream 100 bases:

>100_bases
CCACACCGACCACCCTGAGCGGGGCGATCCTGGATCCGATGCTGCGCGCCGACCCGGTCGGCCCGCGCATCACCTACTAT
GACGATGCCACCGGTGAGCG

Product: CPSA-related protein

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 497; Mature: 496

Protein sequence:

>497_residues
MSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAHGNPLSAE
ELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAG
TEAGREALIKTVADLTGVTVDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDL
PRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATIPVLDGAG
WSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGD
HVPGSQVRAAKADDLGAQQVAKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTP
PPSPILTAGSDAPECIN

Sequences:

>Translated_497_residues
MSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAHGNPLSAE
ELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAG
TEAGREALIKTVADLTGVTVDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDL
PRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATIPVLDGAG
WSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGD
HVPGSQVRAAKADDLGAQQVAKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTP
PPSPILTAGSDAPECIN
>Mature_496_residues
SAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAIDILLVGLDSRTDAHGNPLSAEE
LATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSYVAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGT
EAGREALIKTVADLTGVTVDHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDLP
RGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQLQKLAGGNVAFATIPVLDGAGW
SDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTPAKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDH
VPGSQVRAAKADDLGAQQVAKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTPP
PSPILTAGSDAPECIN

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 51183; Mature: 51052

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAID
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCEE
ILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSY
EEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCE
VAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTV
EECCCCCCCEECCCCCCCHHHHHHCCEECCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCH
DHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDL
HHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHCCC
PRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
QKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTP
HHHCCCCEEEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEECC
AKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQV
CCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCHHCCCHHHH
AKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTP
HHHHCCCCEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
PPSPILTAGSDAPECIN
CCCCEEECCCCCCCCCC
>Mature Secondary Structure 
SAQRVVRTVRTARAISTALAVAIVLGTGVAWSSVRSFEDGIFHMSAPSLGHGGDDGAID
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCEE
ILLVGLDSRTDAHGNPLSAEELATLHAGDEEATNTDTIILIRVPNNGKSATAISIPRDSY
EEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCE
VAAPGLGKTKINGVYGQTRETKRAGLVQAGASPTEAAAAGTEAGREALIKTVADLTGVTV
EECCCCCCCEECCCCCCCHHHHHHCCEECCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCH
DHYAEIGLLGFALIADALGGVDVCLKEPVYEPLSGADFPAGRQKLNGPQALSFVRQRHDL
HHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHCCC
PRGDLDRVVRQQAVMAALAHRVISGQTLSSPATLKRLEQAVQRSVVLSSGWDIMDFVRQL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
QKLAGGNVAFATIPVLDGAGWSDDGMQSVVRVDPRQVQDWVVGLLHEQDQGKTDELAYTP
HHHCCCCEEEEEEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCEEECC
AKTTANVVNDTDINGLAAAVSKVLSSKGFTTGSVGNNDGDHVPGSQVRAAKADDLGAQQV
CCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCHHCCCHHHH
AKELGGLPVVADASIAPGSVRVVLANDYSGPGSGLGGSDPNGVVSPARAFNLGSADDTTP
HHHHCCCCEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
PPSPILTAGSDAPECIN
CCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12721630 [H]