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The map label for this gene is ybjK [H]

Identifier: 148824258

GI number: 148824258

Start: 3442471

End: 3443079

Strand: Direct

Name: ybjK [H]

Synonym: TBFG_13083

Alternate gene names: 148824258

Gene position: 3442471-3443079 (Clockwise)

Preceding gene: 148824257

Following gene: 148824259

Centisome position: 77.81

GC content: 68.97

Gene sequence:

>609_bases
TTGACCGCAGGCTCCGACCGCCGTCCACGCGACCCAGCCGGTCGCCGGCAGGCGATCGTCGAGGCGGCCGAGCGCGTGAT
CGCTCGCCAGGGCCTTGGCGGGCTGAGCCACCGCAGGGTTGCCGCGGAGGCCAATGTACCGGTCGGGTCGACGACCTACT
ACTTCAATGACCTCGACGCGCTGCGGGAAGCCGCGCTCGCGCACGCCGCAAACGCCTCGGCCGACCTGTTGGCGCAGTGG
CGCAGCGACCTCGACAAGGACCGCGACCTGGCCGCGACCCTGGCCCGGCTCACCACCGTCTACCTGGCCGACCAGGACCG
CTATCGCACGCTCAACGAGTTGTACATGGCGGCAGCTCATCGACCGGAACTGCAGCGCTTGGCCCGGCTGTGGCCAGATG
GTCTACTCGCGCTGCTCGAACCGCGCATCGGTCGACGAGCCGCCAACGCGGTCACCGTGTTTTTCGACGGCGCTACGCTG
CACGCGCTTATCACCGGTACCCCGCTGAGCACCGATGAGCTCACCGATGCCATCGCCAGGCTGGTTGCGGACGGCCCGGA
ACAGCGCGAAGTGGGACAATCTGCCCATGCGGGACGAACCCCCGACTGA

Upstream 100 bases:

>100_bases
TCGCCGTACTGTTTCTCGGCTCGCCGATATCTGTGATGAAGGTGGTTGGCGTCGGCCTGATTGTCGTCGGCGTGGTCACG
TTGAACCTGGCGGGTGCCCA

Downstream 100 bases:

>100_bases
CACCGCAGCGGCTCCCACCACCGGTGCGGCACCTGAGATTGACACCGCCCGCGAATACGAAGTAACCGCCGAATACCAGT
CCTGGCGGGTCGTCTGGGGA

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MTAGSDRRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASADLLAQW
RSDLDKDRDLAATLARLTTVYLADQDRYRTLNELYMAAAHRPELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATL
HALITGTPLSTDELTDAIARLVADGPEQREVGQSAHAGRTPD

Sequences:

>Translated_202_residues
MTAGSDRRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASADLLAQW
RSDLDKDRDLAATLARLTTVYLADQDRYRTLNELYMAAAHRPELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATL
HALITGTPLSTDELTDAIARLVADGPEQREVGQSAHAGRTPD
>Mature_201_residues
TAGSDRRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDALREAALAHAANASADLLAQWR
SDLDKDRDLAATLARLTTVYLADQDRYRTLNELYMAAAHRPELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLH
ALITGTPLSTDELTDAIARLVADGPEQREVGQSAHAGRTPD

Specific function: Unknown

COG id: COG3226

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787069, Length=180, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21958; Mature: 21827

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAGSDRRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEECHHHH
LREAALAHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLNELYMAAAH
HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
RPELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIAR
CHHHHHHHHHCCHHHHHHHCHHHCHHHCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHH
LVADGPEQREVGQSAHAGRTPD
HHHCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TAGSDRRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFNDLDA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCEEEECHHHH
LREAALAHAANASADLLAQWRSDLDKDRDLAATLARLTTVYLADQDRYRTLNELYMAAAH
HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
RPELQRLARLWPDGLLALLEPRIGRRAANAVTVFFDGATLHALITGTPLSTDELTDAIAR
CHHHHHHHHHCCHHHHHHHCHHHCHHHCCEEEEEECCCEEEEEEECCCCCHHHHHHHHHH
LVADGPEQREVGQSAHAGRTPD
HHHCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]