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The map label for this gene is rimM

Identifier: 148824096

GI number: 148824096

Start: 3227890

End: 3228420

Strand: Reverse

Name: rimM

Synonym: TBFG_12921

Alternate gene names: 148824096

Gene position: 3228420-3227890 (Counterclockwise)

Preceding gene: 148824097

Following gene: 148824095

Centisome position: 72.97

GC content: 62.9

Gene sequence:

>531_bases
ATGGAGCTGGTAGTCGGGCGGGTGGTGAAGTCGCACGGTGTCACCGGCGAGGTCGTCGTCGAGATCCGCACCGACGACCC
AGCTGACCGGTTTGCGCCGGGTACCAGGTTGCGCGCTAAGGGGCCTTTTGACGGTGGTGCCGAGGGCAGTGCGGTGAGTT
ACGTCATCGAAAGTGTGCGGCAGCACGGCGGCCGCCTGTTGGTGCGACTCGCTGGAGTGGCCGATCGAGACGCAGCCGAT
GCGTTGCGCGGCAGCTTGTTCGTGATCGACGCCGATGACTTGCCCCCGATCGACGAGCCGGACACCTATTACGATCACCA
GCTGGTGGGGCTTATGGTCCAGACGGCGACGGGGGAGGGTGTTGGTGTCGTCACCGAAGTGGTGCACACCGCCGCTGGTG
AGTTGCTGGCGGTCAAGCGTGATTCCGATGAGGTTTTGGTGCCGTTTGTGCGTGCCATCGTCACGTCGGTGTCATTGGAC
GACGGCATCGTTGAGATTGATCCGCCCCATGGCTTGCTGAATCTGGAGTAA

Upstream 100 bases:

>100_bases
GGACGCACCGCTACCGCATTGCGCACTCTGGTAGCCGGTATCGGTGGCCGCGGTATCCGCGTCGACGTGGTGGACACCGA
CCAGTAGCGGAGCCCCGCTC

Downstream 100 bases:

>100_bases
GGCGTGCGCATCGATATCGTGACGATCTTCCCCGCCTGCCTGGACCCGTTGCGACAGTCGTTGCCGGGCAAGGCGATCGA
ATCGGGCCTGGTCGACCTTA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVRQHGGRLLVRLAGVADRDAAD
ALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEGVGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLD
DGIVEIDPPHGLLNLE

Sequences:

>Translated_176_residues
MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVRQHGGRLLVRLAGVADRDAAD
ALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEGVGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLD
DGIVEIDPPHGLLNLE
>Mature_176_residues
MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVRQHGGRLLVRLAGVADRDAAD
ALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEGVGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLD
DGIVEIDPPHGLLNLE

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=177, Percent_Identity=29.3785310734463, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_MYCBO (P66654)

Other databases:

- EMBL:   BX248344
- RefSeq:   NP_856576.1
- ProteinModelPortal:   P66654
- EnsemblBacteria:   EBMYCT00000015389
- GeneID:   1092176
- GenomeReviews:   BX248333_GR
- KEGG:   mbo:Mb2931c
- GeneTree:   EBGT00050000017443
- HOGENOM:   HBG703775
- OMA:   PDEFYDH
- ProtClustDB:   PRK00122
- BioCyc:   MBOV233413:MB2931C-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18616; Mature: 18616

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR
CCCHHHHHHHHCCCCEEEEEEEECCCCHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHH
QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG
HCCCEEEEEEECCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCHHEEEEEEEECCCCC
VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNLE
CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCEEECC
>Mature Secondary Structure
MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR
CCCHHHHHHHHCCCCEEEEEEEECCCCHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHH
QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG
HCCCEEEEEEECCCCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCHHEEEEEEEECCCCC
VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNLE
CHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972