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The map label for this gene is ycdK [C]

Identifier: 148823894

GI number: 148823894

Start: 3031413

End: 3031841

Strand: Direct

Name: ycdK [C]

Synonym: TBFG_12719

Alternate gene names: 148823894

Gene position: 3031413-3031841 (Clockwise)

Preceding gene: 148823893

Following gene: 148823896

Centisome position: 68.52

GC content: 65.73

Gene sequence:

>429_bases
ATGTCAGCTAGCCGCACCATGGTCTCGTCCGGATCGGAGTTCGAATCAGCCGTCGGCTACTCGCGCGCGGTACGCATCGG
GCCACTCGTGGTGGTGGCCGGAACGACCGGCAGCGGCGATGATATCGCCGCTCAGACGCGAGACGCTCTGCGCCGCATCG
AGATTGCGCTCGGACAGGCCGGCGCAACTCTGGCCGACGTGGTCCGTACCCGCATCTATGTGACCGATATTTCCCGCTGG
CGCGAGGTCGGCGAAGTGCATGCACAGGCTTTCGGCAAGATCCGTCCGGTGACGAGCATGGTCGAGGTTACCGCGCTGAT
TGCGCCCGGCCTGCTGGTAGAGATCGAGGCCGACGCCTACGTAGGGTCGGCGGTTGCAGACCGAAATTCGGGAGCCGGCC
CGAAGGACCCGTCACCAGCCGGTGGGTAG

Upstream 100 bases:

>100_bases
CAAGACTATGTCGAAGTTGCGCCATCCGAGCCGCTCACAGGTCCTGCGCGACTACCTGGACTGAGAGCGCCCGCCGAGGC
GACCAACGTAGCGGGCCCCC

Downstream 100 bases:

>100_bases
GCGGCGGCCCCAATCACAGCGCGCACCGGCAGTGGGCCGTAGAGATGCGGGAAAAGCATCGACCGCGGATCAGTAGGCAC
GCCCGGCTCCCAACGCACGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQAGATLADVVRTRIYVTDISRW
REVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYVGSAVADRNSGAGPKDPSPAGG

Sequences:

>Translated_142_residues
MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQAGATLADVVRTRIYVTDISRW
REVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYVGSAVADRNSGAGPKDPSPAGG
>Mature_141_residues
SASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQAGATLADVVRTRIYVTDISRWR
EVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYVGSAVADRNSGAGPKDPSPAGG

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14628; Mature: 14496

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQA
CCCCCCHHCCCCHHHHHHCHHHEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
GATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCCH
VGSAVADRNSGAGPKDPSPAGG
HCHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SASRTMVSSGSEFESAVGYSRAVRIGPLVVVAGTTGSGDDIAAQTRDALRRIEIALGQA
CCCCCHHCCCCHHHHHHCHHHEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
GATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEECCCH
VGSAVADRNSGAGPKDPSPAGG
HCHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]