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The map label for this gene is pdxS [H]

Identifier: 148823800

GI number: 148823800

Start: 2946488

End: 2947387

Strand: Reverse

Name: pdxS [H]

Synonym: TBFG_12625

Alternate gene names: 148823800

Gene position: 2947387-2946488 (Counterclockwise)

Preceding gene: 148823803

Following gene: 148823799

Centisome position: 66.62

GC content: 65.33

Gene sequence:

>900_bases
ATGGATCCTGCAGGTAACCCAGCGACCGGTACGGCGCGGGTCAAGCGCGGCATGGCCGAGATGCTCAAGGGCGGCGTCAT
CATGGACGTTGTCACCCCGGAGCAGGCCCGCATCGCCGAGGGCGCCGGTGCGGTTGCGGTAATGGCGTTGGAAAGGGTGC
CCGCCGATATCCGCGCCCAGGGCGGGGTGTCGCGGATGAGTGACCCCGACATGATCGAGGGCATCATCGCCGCGGTCACC
ATCCCGGTGATGGCTAAAGTGCGCATCGGCCACTTTGTCGAGGCGCAGATCCTGCAGACGTTGGGCGTCGACTACATCGA
CGAGTCCGAGGTGCTGACGCCCGCTGACTACGCCCACCATATCGACAAGTGGAACTTCACGGTGCCTTTCGTGTGTGGGG
CGACCAATCTCGGTGAGGCGTTGAGGCGCATCAGCGAGGGAGCGGCCATGATCCGGTCCAAGGGCGAGGCCGGGACCGGA
GACGTCTCCAACGCGACCACACACATGCGGGCCATCGGTGGTGAGATCCGCCGGTTGACGTCGATGTCGGAGGACGAATT
GTTTGTCGCGGCAAAAGAATTGCAAGCGCCCTATGAACTCGTTGCCGAGGTAGCTCGGGCGGGCAAGTTGCCGGTCACAC
TGTTCACCGCCGGGGGTATCGCCACGCCCGCCGACGCGGCGATGATGATGCAGCTTGGCGCCGAGGGCGTCTTCGTGGGT
TCCGGTATTTTCAAGTCCGGCGCCCCTGAGCACCGCGCCGCCGCGATCGTCAAGGCCACCACGTTCTTCGACGATCCCGA
TGTGCTGGCCAAGGTGTCGCGCGGGCTGGGCGAGGCGATGGTGGGCATCAACGTGGACGAGATCGCTGTCGGTCATCGGC
TCGCCCAGCGCGGCTGGTGA

Upstream 100 bases:

>100_bases
GGATTCGTAATTTACCAATCGGCGTCCTGGCCACGCCCCTGAGTGGCTAGCAGACCGGCGCGGTAGCGGTCGTATCGTAG
TGGGGACAAGAGGAGGCACC

Downstream 100 bases:

>100_bases
GAACCCGCGACGAGCAGACGGTCATCGCGTGTCGATCGAAGAGATCCTTGATCTTGAGCAACTTGAGGTCAACATCTACC
GAGGAAGCGTGTTCAGCCCC

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDPAGNPATGTARVKRGMAEMLKGGVIMDVVTPEQARIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGIIAAVT
IPVMAKVRIGHFVEAQILQTLGVDYIDESEVLTPADYAHHIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTG
DVSNATTHMRAIGGEIRRLTSMSEDELFVAAKELQAPYELVAEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVG
SGIFKSGAPEHRAAAIVKATTFFDDPDVLAKVSRGLGEAMVGINVDEIAVGHRLAQRGW

Sequences:

>Translated_299_residues
MDPAGNPATGTARVKRGMAEMLKGGVIMDVVTPEQARIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGIIAAVT
IPVMAKVRIGHFVEAQILQTLGVDYIDESEVLTPADYAHHIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTG
DVSNATTHMRAIGGEIRRLTSMSEDELFVAAKELQAPYELVAEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVG
SGIFKSGAPEHRAAAIVKATTFFDDPDVLAKVSRGLGEAMVGINVDEIAVGHRLAQRGW
>Mature_299_residues
MDPAGNPATGTARVKRGMAEMLKGGVIMDVVTPEQARIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIEGIIAAVT
IPVMAKVRIGHFVEAQILQTLGVDYIDESEVLTPADYAHHIDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTG
DVSNATTHMRAIGGEIRRLTSMSEDELFVAAKELQAPYELVAEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVG
SGIFKSGAPEHRAAAIVKATTFFDDPDVLAKVSRGLGEAMVGINVDEIAVGHRLAQRGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=291, Percent_Identity=62.8865979381443, Blast_Score=367, Evalue=1e-102,
Organism=Saccharomyces cerevisiae, GI6321049, Length=294, Percent_Identity=64.6258503401361, Blast_Score=366, Evalue=1e-102,
Organism=Saccharomyces cerevisiae, GI6323996, Length=294, Percent_Identity=64.2857142857143, Blast_Score=365, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 31365; Mature: 31365

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPAGNPATGTARVKRGMAEMLKGGVIMDVVTPEQARIAEGAGAVAVMALERVPADIRAQ
CCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCCHHHHHHHHHCCHHHHCC
GGVSRMSDPDMIEGIIAAVTIPVMAKVRIGHFVEAQILQTLGVDYIDESEVLTPADYAHH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
IDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTGDVSNATTHMRAIGGEIRRLT
HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
SMSEDELFVAAKELQAPYELVAEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVG
CCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEE
SGIFKSGAPEHRAAAIVKATTFFDDPDVLAKVSRGLGEAMVGINVDEIAVGHRLAQRGW
CCCCCCCCCHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDPAGNPATGTARVKRGMAEMLKGGVIMDVVTPEQARIAEGAGAVAVMALERVPADIRAQ
CCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHCCCCHHHHHHHHHCCHHHHCC
GGVSRMSDPDMIEGIIAAVTIPVMAKVRIGHFVEAQILQTLGVDYIDESEVLTPADYAHH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
IDKWNFTVPFVCGATNLGEALRRISEGAAMIRSKGEAGTGDVSNATTHMRAIGGEIRRLT
HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
SMSEDELFVAAKELQAPYELVAEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVG
CCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEE
SGIFKSGAPEHRAAAIVKATTFFDDPDVLAKVSRGLGEAMVGINVDEIAVGHRLAQRGW
CCCCCCCCCHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA