Click here to switch to the map view.

The map label for this gene is lppB

Identifier: 148823739

GI number: 148823739

Start: 2880442

End: 2881104

Strand: Direct

Name: lppB

Synonym: TBFG_12564

Alternate gene names: 148823739

Gene position: 2880442-2881104 (Clockwise)

Preceding gene: 148823738

Following gene: 148823740

Centisome position: 65.1

GC content: 59.43

Gene sequence:

>663_bases
TTGATCGCACCACAACCGATTCCCCGAACGCTCCCACGGTGGCAGCGCATCGTCGCGCTGACCATGATCGGCATATCAAC
CGCCCTGATAGGTGGCTGCACAATGGGCCAAAACCCCGACAAATCACCGCACCTGACCGGCGAGCAGAAGATCCAGCTCA
TCGACAGCATGCGCCACAAAGGCTCCTACGAGGCCGCCCGGGAACGCCTCACCGCCACCGCCCAGATCATCGCCGACCGC
GTCAGTGCGGCCATCCCGGGCCAAACCTGGAAATTCAACGACGACTCCTACGGCCAAGACTTCTATAGAAATGGATCGTT
GTGTAAGGAACTCAGTGCCGATATCGCCCGGCGGCCGATGGCCAAACCGGTTGACTTCGGTAGCACATTCTCGGCGGAAG
ACTTCAAGATTGCCGCCAATATCGTGCGAGAGGAAGCCGCCAAGTACGGTGTGACCACCGAGTCGTCGCTGTTTAACGAA
TCGGCCAAACGCGACTACGACGTGCAGGGCAACGGCTACGAATTCAACCTGGGCCAAATCAAATTCGCCACACTTAACAT
CACCGGCGACTGTTTTCTGTTGCAGAAGGTGCTCGACCTGCCGGCCGGACAACTCCCCCCCGAACCACCCATTTGGCCGA
CGACCTCGACGCCAACCCCGTGA

Upstream 100 bases:

>100_bases
ACATCACCGGCGATTGTTTTCTGTTGCAGAAGGTGCTCGACCTGCCGGCCGGACAACTCCCCCCGGAACCACCCATCTGG
CCAACGACCTCGACGCCACA

Downstream 100 bases:

>100_bases
GCACCACCATCGTTGCTGGCGTGATCCAGGGTCACCTGCCGGTGATCCTGCCCACGCGCAGGCGGGCTCGCGATCTCGGG
CACACGACGGCGTTATTTCG

Product: lipoprotein lppB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MIAPQPIPRTLPRWQRIVALTMIGISTALIGGCTMGQNPDKSPHLTGEQKIQLIDSMRHKGSYEAARERLTATAQIIADR
VSAAIPGQTWKFNDDSYGQDFYRNGSLCKELSADIARRPMAKPVDFGSTFSAEDFKIAANIVREEAAKYGVTTESSLFNE
SAKRDYDVQGNGYEFNLGQIKFATLNITGDCFLLQKVLDLPAGQLPPEPPIWPTTSTPTP

Sequences:

>Translated_220_residues
MIAPQPIPRTLPRWQRIVALTMIGISTALIGGCTMGQNPDKSPHLTGEQKIQLIDSMRHKGSYEAARERLTATAQIIADR
VSAAIPGQTWKFNDDSYGQDFYRNGSLCKELSADIARRPMAKPVDFGSTFSAEDFKIAANIVREEAAKYGVTTESSLFNE
SAKRDYDVQGNGYEFNLGQIKFATLNITGDCFLLQKVLDLPAGQLPPEPPIWPTTSTPTP
>Mature_220_residues
MIAPQPIPRTLPRWQRIVALTMIGISTALIGGCTMGQNPDKSPHLTGEQKIQLIDSMRHKGSYEAARERLTATAQIIADR
VSAAIPGQTWKFNDDSYGQDFYRNGSLCKELSADIARRPMAKPVDFGSTFSAEDFKIAANIVREEAAKYGVTTESSLFNE
SAKRDYDVQGNGYEFNLGQIKFATLNITGDCFLLQKVLDLPAGQLPPEPPIWPTTSTPTP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mycobacteriales lppA/lppB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LPPB_MYCTU (P95009)

Other databases:

- EMBL:   BX842580
- EMBL:   AE000516
- PIR:   D70659
- RefSeq:   NP_217060.1
- RefSeq:   NP_337117.1
- EnsemblBacteria:   EBMYCT00000000687
- EnsemblBacteria:   EBMYCT00000071250
- GeneID:   888054
- GeneID:   925688
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT2620
- KEGG:   mtu:Rv2544
- TIGR:   MT2620
- TubercuList:   Rv2544
- GeneTree:   EBGT00050000018104
- HOGENOM:   HBG565270
- ProtClustDB:   CLSK791914

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24194; Mature: 24194

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51257 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAPQPIPRTLPRWQRIVALTMIGISTALIGGCTMGQNPDKSPHLTGEQKIQLIDSMRHK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
GSYEAARERLTATAQIIADRVSAAIPGQTWKFNDDSYGQDFYRNGSLCKELSADIARRPM
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCCHHHHHHHHHHHHCCC
AKPVDFGSTFSAEDFKIAANIVREEAAKYGVTTESSLFNESAKRDYDVQGNGYEFNLGQI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEE
KFATLNITGDCFLLQKVLDLPAGQLPPEPPIWPTTSTPTP
EEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIAPQPIPRTLPRWQRIVALTMIGISTALIGGCTMGQNPDKSPHLTGEQKIQLIDSMRHK
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
GSYEAARERLTATAQIIADRVSAAIPGQTWKFNDDSYGQDFYRNGSLCKELSADIARRPM
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCCHHHHHHHHHHHHCCC
AKPVDFGSTFSAEDFKIAANIVREEAAKYGVTTESSLFNESAKRDYDVQGNGYEFNLGQI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEECCEE
KFATLNITGDCFLLQKVLDLPAGQLPPEPPIWPTTSTPTP
EEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036