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The map label for this gene is ycdC [C]

Identifier: 148823703

GI number: 148823703

Start: 2835030

End: 2835677

Strand: Direct

Name: ycdC [C]

Synonym: TBFG_12528

Alternate gene names: 148823703

Gene position: 2835030-2835677 (Clockwise)

Preceding gene: 148823691

Following gene: 148823704

Centisome position: 64.08

GC content: 66.82

Gene sequence:

>648_bases
GTGACAGCGTCCGCCCCGGACGGTCGGCCCGGCCAGCCCGAGGCCACAAATCGTCGCAGTCAGCTGAAGTCCGACCGACG
ATTCCAACTCTTGGCAGCCGCCGAACGATTGTTTGCCGAACGAGGATTCCTGGCGGTGCGACTGGAGGACATCGGCGCCG
CCGCGGGCGTCAGCGGTCCGGCCATCTACCGACACTTCCCCAACAAAGAGTCGCTGCTGGTGGAATTGCTGGTCGGCGTC
AGTGCGCGACTTCTTGCCGGCGCACGCGATGTGACGACCCGCAGCGCTAACTTGGCCGCGGCACTGGATGGCCTCATCGA
GTTTCACCTTGACTTCGCACTCGGCGAAGCAGACCTCATCCGGATCCAGGACCGGGACCTAGCGCACCTGCCGGCCGTCG
CTGAGCGGCAGGTGCGTAAGGCCCAGCGACAGTACGTGGAGGTCTGGGTCGGGGTGCTGCGCGAGCTGAACCCAGGCCTG
GCCGAAGCCGACGCCCGGCTGATGGCCCACGCCGTGTTCGGACTGCTGAACTCCACCCCGCATAGCATGAAAGCGGCCGA
CAGCAAGCCGGCACGGACGGTGCGTGCACGCGCCGTCCTACGGGCGATGACGGTCGCCGCGCTATCGGCCGCGGATCGTT
GTCTATAG

Upstream 100 bases:

>100_bases
TGCCTACCGCATGTCTGACTCGCGTTAACATCGAATAGCTCGTGCTACGTTAGTGACGATTAACCGAAGTGTCCAGCATG
AGTCGTGTACGGAGACCGTC

Downstream 100 bases:

>100_bases
CTCGCCAGGCTGCGATGTCGCCGGGTACATCAGCGCACCCGCACCCAGCGCGGGTACCCTGCATGCCATGAGGTGGACAT
GAACGATCCACGTCGCCCCC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; TetR-Family Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator; Tetr Family Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; LOW QUALITY PROTEIN TetR Family Transcriptional Regulator; Regulatory Protein; TetR-Family Protein Transcriptional Regulator

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MTASAPDGRPGQPEATNRRSQLKSDRRFQLLAAAERLFAERGFLAVRLEDIGAAAGVSGPAIYRHFPNKESLLVELLVGV
SARLLAGARDVTTRSANLAAALDGLIEFHLDFALGEADLIRIQDRDLAHLPAVAERQVRKAQRQYVEVWVGVLRELNPGL
AEADARLMAHAVFGLLNSTPHSMKAADSKPARTVRARAVLRAMTVAALSAADRCL

Sequences:

>Translated_215_residues
MTASAPDGRPGQPEATNRRSQLKSDRRFQLLAAAERLFAERGFLAVRLEDIGAAAGVSGPAIYRHFPNKESLLVELLVGV
SARLLAGARDVTTRSANLAAALDGLIEFHLDFALGEADLIRIQDRDLAHLPAVAERQVRKAQRQYVEVWVGVLRELNPGL
AEADARLMAHAVFGLLNSTPHSMKAADSKPARTVRARAVLRAMTVAALSAADRCL
>Mature_214_residues
TASAPDGRPGQPEATNRRSQLKSDRRFQLLAAAERLFAERGFLAVRLEDIGAAAGVSGPAIYRHFPNKESLLVELLVGVS
ARLLAGARDVTTRSANLAAALDGLIEFHLDFALGEADLIRIQDRDLAHLPAVAERQVRKAQRQYVEVWVGVLRELNPGLA
EADARLMAHAVFGLLNSTPHSMKAADSKPARTVRARAVLRAMTVAALSAADRCL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23220; Mature: 23089

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASAPDGRPGQPEATNRRSQLKSDRRFQLLAAAERLFAERGFLAVRLEDIGAAAGVSGP
CCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCC
AIYRHFPNKESLLVELLVGVSARLLAGARDVTTRSANLAAALDGLIEFHLDFALGEADLI
HHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEE
RIQDRDLAHLPAVAERQVRKAQRQYVEVWVGVLRELNPGLAEADARLMAHAVFGLLNSTP
EECCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
HSMKAADSKPARTVRARAVLRAMTVAALSAADRCL
CHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TASAPDGRPGQPEATNRRSQLKSDRRFQLLAAAERLFAERGFLAVRLEDIGAAAGVSGP
CCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCCC
AIYRHFPNKESLLVELLVGVSARLLAGARDVTTRSANLAAALDGLIEFHLDFALGEADLI
HHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEE
RIQDRDLAHLPAVAERQVRKAQRQYVEVWVGVLRELNPGLAEADARLMAHAVFGLLNSTP
EECCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
HSMKAADSKPARTVRARAVLRAMTVAALSAADRCL
CHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA