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The map label for this gene is ybhR [H]

Identifier: 148822893

GI number: 148822893

Start: 1906630

End: 1907310

Strand: Reverse

Name: ybhR [H]

Synonym: TBFG_11702

Alternate gene names: 148822893

Gene position: 1907310-1906630 (Counterclockwise)

Preceding gene: 148822894

Following gene: 148822892

Centisome position: 43.11

GC content: 63.44

Gene sequence:

>681_bases
ATGATCTTGCTGGTACCCATCCTGATCATCACGCTGATGTATTTCATGTTCGAGAACGTCCCGCATCGCCCCGGTACCCC
ATCCGGGTTCAACACCGCTTGCCTGGTGCTACTGGGCCTGTTCCCACTCTTTGTGATGTTTGTGATCACGGCGATCACCA
TGCAACGCGAAAGGGCTTCGGGAACGCTGGAGCGCATCCTGACCACCCCGCTACGCCGGCTTGATCTGCTCGCCGGCTAC
GGGACCGCGTTCTCGATCGCCGCGGCGGCGCAGGCCACGCTGGCCTGCATTGTGGCGTTCTGGTTCCTTGGCTTTGACAC
GGCGGGCAGCCCGGTGTGGGTGTTCGCGATCGCGATCGTCAACGCCGTCTTGGGTGTCGGGCTCGGTCTATTGTGTAGTG
CCTTCGCCCGCACCGAATTTCAGGCCGTACAGTTCATCCCGCTGGTGATGGTGCCGCAGCTGCTGCTCGCCGGCATCATC
GTCCCGCGGGCACTGATGCCGACGTGGCTGGAGTGGATCAGTAACGTGATGCCGGCCAGCTACGCGCTCGAGGCGCTACA
ACAGGTGGGTGCGCATCCGGAGCTGACCGGTATCGCGGTGCGCGACGTCGTCGTCGTGCTGAGTTTCGCGGTCGCGTCGC
TGTGTCTGGCGGCGGTGACACTGCGGCGACGGACGTCATAG

Upstream 100 bases:

>100_bases
GCACCACCACCGTGCCCGCGGCCGGCTAACGCTGCAGAACTACACGGCCACTACGGCGCGGATTCTCCGGCAGCTTGCCG
CTGATCACCGCAGTGTCGCG

Downstream 100 bases:

>100_bases
CGTGGCGGCGCCGGACAACAGCCGCAGACGGCCCGGGCGACCCGCCGGCAGCTCTGACACTAGGGAGCGAATCCTGTCCA
GTGCCCGAGAACTCTTTGCG

Product: ABC-2 type transport system permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MILLVPILIITLMYFMFENVPHRPGTPSGFNTACLVLLGLFPLFVMFVITAITMQRERASGTLERILTTPLRRLDLLAGY
GTAFSIAAAAQATLACIVAFWFLGFDTAGSPVWVFAIAIVNAVLGVGLGLLCSAFARTEFQAVQFIPLVMVPQLLLAGII
VPRALMPTWLEWISNVMPASYALEALQQVGAHPELTGIAVRDVVVVLSFAVASLCLAAVTLRRRTS

Sequences:

>Translated_226_residues
MILLVPILIITLMYFMFENVPHRPGTPSGFNTACLVLLGLFPLFVMFVITAITMQRERASGTLERILTTPLRRLDLLAGY
GTAFSIAAAAQATLACIVAFWFLGFDTAGSPVWVFAIAIVNAVLGVGLGLLCSAFARTEFQAVQFIPLVMVPQLLLAGII
VPRALMPTWLEWISNVMPASYALEALQQVGAHPELTGIAVRDVVVVLSFAVASLCLAAVTLRRRTS
>Mature_226_residues
MILLVPILIITLMYFMFENVPHRPGTPSGFNTACLVLLGLFPLFVMFVITAITMQRERASGTLERILTTPLRRLDLLAGY
GTAFSIAAAAQATLACIVAFWFLGFDTAGSPVWVFAIAIVNAVLGVGLGLLCSAFARTEFQAVQFIPLVMVPQLLLAGII
VPRALMPTWLEWISNVMPASYALEALQQVGAHPELTGIAVRDVVVVLSFAVASLCLAAVTLRRRTS

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787010, Length=142, Percent_Identity=28.8732394366197, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 24393; Mature: 24393

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILLVPILIITLMYFMFENVPHRPGTPSGFNTACLVLLGLFPLFVMFVITAITMQRERAS
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTLERILTTPLRRLDLLAGYGTAFSIAAAAQATLACIVAFWFLGFDTAGSPVWVFAIAIV
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
NAVLGVGLGLLCSAFARTEFQAVQFIPLVMVPQLLLAGIIVPRALMPTWLEWISNVMPAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
YALEALQQVGAHPELTGIAVRDVVVVLSFAVASLCLAAVTLRRRTS
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MILLVPILIITLMYFMFENVPHRPGTPSGFNTACLVLLGLFPLFVMFVITAITMQRERAS
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GTLERILTTPLRRLDLLAGYGTAFSIAAAAQATLACIVAFWFLGFDTAGSPVWVFAIAIV
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
NAVLGVGLGLLCSAFARTEFQAVQFIPLVMVPQLLLAGIIVPRALMPTWLEWISNVMPAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
YALEALQQVGAHPELTGIAVRDVVVVLSFAVASLCLAAVTLRRRTS
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]