Click here to switch to the map view.

The map label for this gene is yibD [C]

Identifier: 148822743

GI number: 148822743

Start: 1714281

End: 1715240

Strand: Direct

Name: yibD [C]

Synonym: TBFG_11552

Alternate gene names: 148822743

Gene position: 1714281-1715240 (Clockwise)

Preceding gene: 148822742

Following gene: 148822744

Centisome position: 38.75

GC content: 63.23

Gene sequence:

>960_bases
GTGGTGCCTGGTGATGCATCAAGCGTGGTATCGGTGAACCCGGCGAAACCGCTTATCTCGGTGTGCATCCCGATGTACAA
CAACGGCGCCACCATCGAGCGCTGTCTGCGTAGCATCCTCGAACAGGAGGGCGTCGAGTTCGAGATCGTGGTCGTTGACG
ACGACTCGTCCGACGACTGCGCCGCGATCGCCGCAACGATGCTGCGACCCGGAGACCGCTTGCTGCGAAATGAGCCTCGC
CTCGGCCTCAACCGAAACCACAACAAATGTCTGGAAGTCGCGCGCGGCGGACTTATTCAGTTCGTACATGGTGATGATCG
GCTGCTCCCCGGAGCCCTGCAGACACTCAGCCGACGTTTTGAGGATCCCAGTGTCGGAATGGCTTTCGCCCCCCGACGGG
TGGAGAGCGACGACATCAAGTGGCAAGAACGGTACGGCAGGGTCCATACCCGTTTCCGCAAGCTGCGCGACCGCAACCAC
GGGCCGTCGCTGGTCTTGCAGATGGTATTGCACGGCGCGAAGGAAAATTGGATCGGCGAACCGACCGCCGTGATGTTTCG
GCGGCAATTGGCGCTGGACGCCGGTGGTTTTCGCACCGATATCTACCAGCTCGTCGATGTGGACTTCTGGCTTCGGTTGA
TGCTGAGGTCGGCGGTCTGCTTCGTTCCGCACGAGCTCTCGGTGCGCCGTCACACGGCGGCGACGGAGACCACACGGGTG
ATGGCGACTCGGCGCAACGTGCTGGACCGACAGCGCATTCTCACCTGGTTGATCGTGGACCCGTTGTCGCCCAACAGCGT
TCGCAGCGCCGCGGCGCTGTGGTGGATACCCGCATGGCTGGCCATGATCGTGGAGGTGGCCGTGCTCGGACCGCAGCGGC
GGACGCACTTGAAGGCTTTGGCGCCGGCCCCATTCCGCGAGTTCGCCCACGCCCGGCGTCAACTGCCGATGGCTGACTAG

Upstream 100 bases:

>100_bases
ATTGGGTACGGTCCAATCGTCGGCAGATCTCCCTCACCATCCTGATAGGGGTCGGGTTCCTCTTTTTGTACCAGGGCGTG
ACTAGTCTCTGAGTCGCCAT

Downstream 100 bases:

>100_bases
CAGTCGCACTCTGCCTGGCCGTCGTCGGAGCCACAGACAATTCCAACCCATTTGGCCTGGCGGCCAAGATGACATTTTTA
CAAGGTAAGGCTAGCCTTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MVPGDASSVVSVNPAKPLISVCIPMYNNGATIERCLRSILEQEGVEFEIVVVDDDSSDDCAAIAATMLRPGDRLLRNEPR
LGLNRNHNKCLEVARGGLIQFVHGDDRLLPGALQTLSRRFEDPSVGMAFAPRRVESDDIKWQERYGRVHTRFRKLRDRNH
GPSLVLQMVLHGAKENWIGEPTAVMFRRQLALDAGGFRTDIYQLVDVDFWLRLMLRSAVCFVPHELSVRRHTAATETTRV
MATRRNVLDRQRILTWLIVDPLSPNSVRSAAALWWIPAWLAMIVEVAVLGPQRRTHLKALAPAPFREFAHARRQLPMAD

Sequences:

>Translated_319_residues
MVPGDASSVVSVNPAKPLISVCIPMYNNGATIERCLRSILEQEGVEFEIVVVDDDSSDDCAAIAATMLRPGDRLLRNEPR
LGLNRNHNKCLEVARGGLIQFVHGDDRLLPGALQTLSRRFEDPSVGMAFAPRRVESDDIKWQERYGRVHTRFRKLRDRNH
GPSLVLQMVLHGAKENWIGEPTAVMFRRQLALDAGGFRTDIYQLVDVDFWLRLMLRSAVCFVPHELSVRRHTAATETTRV
MATRRNVLDRQRILTWLIVDPLSPNSVRSAAALWWIPAWLAMIVEVAVLGPQRRTHLKALAPAPFREFAHARRQLPMAD
>Mature_319_residues
MVPGDASSVVSVNPAKPLISVCIPMYNNGATIERCLRSILEQEGVEFEIVVVDDDSSDDCAAIAATMLRPGDRLLRNEPR
LGLNRNHNKCLEVARGGLIQFVHGDDRLLPGALQTLSRRFEDPSVGMAFAPRRVESDDIKWQERYGRVHTRFRKLRDRNH
GPSLVLQMVLHGAKENWIGEPTAVMFRRQLALDAGGFRTDIYQLVDVDFWLRLMLRSAVCFVPHELSVRRHTAATETTRV
MATRRNVLDRQRILTWLIVDPLSPNSVRSAAALWWIPAWLAMIVEVAVLGPQRRTHLKALAPAPFREFAHARRQLPMAD

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 36090; Mature: 36090

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPGDASSVVSVNPAKPLISVCIPMYNNGATIERCLRSILEQEGVEFEIVVVDDDSSDDC
CCCCCCCCEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCHH
AAIAATMLRPGDRLLRNEPRLGLNRNHNKCLEVARGGLIQFVHGDDRLLPGALQTLSRRF
HHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHC
EDPSVGMAFAPRRVESDDIKWQERYGRVHTRFRKLRDRNHGPSLVLQMVLHGAKENWIGE
CCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCC
PTAVMFRRQLALDAGGFRTDIYQLVDVDFWLRLMLRSAVCFVPHELSVRRHTAATETTRV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
MATRRNVLDRQRILTWLIVDPLSPNSVRSAAALWWIPAWLAMIVEVAVLGPQRRTHLKAL
HHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
APAPFREFAHARRQLPMAD
CCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MVPGDASSVVSVNPAKPLISVCIPMYNNGATIERCLRSILEQEGVEFEIVVVDDDSSDDC
CCCCCCCCEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCHH
AAIAATMLRPGDRLLRNEPRLGLNRNHNKCLEVARGGLIQFVHGDDRLLPGALQTLSRRF
HHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHC
EDPSVGMAFAPRRVESDDIKWQERYGRVHTRFRKLRDRNHGPSLVLQMVLHGAKENWIGE
CCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCC
PTAVMFRRQLALDAGGFRTDIYQLVDVDFWLRLMLRSAVCFVPHELSVRRHTAATETTRV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
MATRRNVLDRQRILTWLIVDPLSPNSVRSAAALWWIPAWLAMIVEVAVLGPQRRTHLKAL
HHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
APAPFREFAHARRQLPMAD
CCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]