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The map label for this gene is pvdS

Identifier: 148663095

GI number: 148663095

Start: 3619653

End: 3620540

Strand: Reverse

Name: pvdS

Synonym: MRA_3273

Alternate gene names: NA

Gene position: 3620540-3619653 (Counterclockwise)

Preceding gene: 148663096

Following gene: 148663094

Centisome position: 81.91

GC content: 58.67

Gene sequence:

>888_bases
GTGGATATACCATCCGTTGATGTGAGCACCGCGACCAACGACGGCGCGTCGTCGAGAGCGAAGGGACACAGATCAGCTGC
GCCGGGCCGGCGCAAGATCTCCGATGCCGTCTACCAAGCCGAATTGTTTCGGCTGCAAACAGAATTCGTGAAGCTGCAAG
AGTGGGCCCGGCATTCGGGTGCGCGTCTGGTGGTCATCTTCGAAGGCCGTGACGGAGCTGGTAAGGGTGGCGCCATCAAA
CGGATCACCGAGTACCTCAACCCGCGAGTGGCTCGTATCGCGGCATTGCCCGCGCCGACGGATCGCGAGCGGGGTCAGTG
GTACTACCAGCGTTATATTGCCCATCTTCCCGCCAAAGGTGAGATAGTGCTCTTCGATCGGTCCTGGTACAACCGCGCCG
GTGTGGAGAAGGTCATGGGTTTCTGTACGCCGCAGGAGTATGTGTTGTTTTTGCGGCAGACCCCGATTTTCGAGCAGATG
CTGATCGATGACGGGATTCTGCTTCGCAAATACTGGTTTTCAGTCTCAGACGCCGAACAGTTGCGCCGATTCAAGGCTCG
ACGGAATGACCCGGTCCGGCAATGGAAGCTCAGCCCAATGGACCTGGAATCGGTGTATCGGTGGGAGGACTATTCGCGCG
CAAAGGACGAGATGATGGTGCATACCGACACCCCCGTCAGCCCCTGGTACGTGGTGGAGTCTGATATCAAAAAGCACGCG
CGGCTGAACATGATGGCCCACTTGCTGTCCACGATTGACTACGCAGATGTGGAAAAGCCAAAGGTCAAGCTGCCGCCACG
GCCGCTTGTGAGTGGCAACTACAGGCGTCCGCCCCGCGAGTTGTCGACATACGTCGACGACTATGTGGCCACGTTGATCG
CCCGGTGA

Upstream 100 bases:

>100_bases
ACGCGATGAGCGATGTCGATCTGCTGCCGGGGCTGTTGAGCCAAGCACTGGACGAGCTTCTGGAGGCTTCGCGGTAGTTG
TTAGGGGTCGATGGTGATGT

Downstream 100 bases:

>100_bases
CGCAGGTCTACATCCCGGCCACCCTGGCCATGTTGCAGCGACTCGTTGCCGATGGCGCGTTGTGGCCGGTCAACGGCACT
GCTTTTGCAGTGACGCCGAC

Product: putative RNA polymerase sigma factor

Products: NA

Alternate protein names: URF2 [H]

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MDIPSVDVSTATNDGASSRAKGHRSAAPGRRKISDAVYQAELFRLQTEFVKLQEWARHSGARLVVIFEGRDGAGKGGAIK
RITEYLNPRVARIAALPAPTDRERGQWYYQRYIAHLPAKGEIVLFDRSWYNRAGVEKVMGFCTPQEYVLFLRQTPIFEQM
LIDDGILLRKYWFSVSDAEQLRRFKARRNDPVRQWKLSPMDLESVYRWEDYSRAKDEMMVHTDTPVSPWYVVESDIKKHA
RLNMMAHLLSTIDYADVEKPKVKLPPRPLVSGNYRRPPRELSTYVDDYVATLIAR

Sequences:

>Translated_295_residues
MDIPSVDVSTATNDGASSRAKGHRSAAPGRRKISDAVYQAELFRLQTEFVKLQEWARHSGARLVVIFEGRDGAGKGGAIK
RITEYLNPRVARIAALPAPTDRERGQWYYQRYIAHLPAKGEIVLFDRSWYNRAGVEKVMGFCTPQEYVLFLRQTPIFEQM
LIDDGILLRKYWFSVSDAEQLRRFKARRNDPVRQWKLSPMDLESVYRWEDYSRAKDEMMVHTDTPVSPWYVVESDIKKHA
RLNMMAHLLSTIDYADVEKPKVKLPPRPLVSGNYRRPPRELSTYVDDYVATLIAR
>Mature_295_residues
MDIPSVDVSTATNDGASSRAKGHRSAAPGRRKISDAVYQAELFRLQTEFVKLQEWARHSGARLVVIFEGRDGAGKGGAIK
RITEYLNPRVARIAALPAPTDRERGQWYYQRYIAHLPAKGEIVLFDRSWYNRAGVEKVMGFCTPQEYVLFLRQTPIFEQM
LIDDGILLRKYWFSVSDAEQLRRFKARRNDPVRQWKLSPMDLESVYRWEDYSRAKDEMMVHTDTPVSPWYVVESDIKKHA
RLNMMAHLLSTIDYADVEKPKVKLPPRPLVSGNYRRPPRELSTYVDDYVATLIAR

Specific function: Unknown

COG id: COG2326

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011993
- InterPro:   IPR022488 [H]

Pfam domain/function: PF03976 PPK2 [H]

EC number: NA

Molecular weight: Translated: 34124; Mature: 34124

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIPSVDVSTATNDGASSRAKGHRSAAPGRRKISDAVYQAELFRLQTEFVKLQEWARHSG
CCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ARLVVIFEGRDGAGKGGAIKRITEYLNPRVARIAALPAPTDRERGQWYYQRYIAHLPAKG
CEEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCC
EIVLFDRSWYNRAGVEKVMGFCTPQEYVLFLRQTPIFEQMLIDDGILLRKYWFSVSDAEQ
CEEEEECCCCCCCCHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHCCCCCHHH
LRRFKARRNDPVRQWKLSPMDLESVYRWEDYSRAKDEMMVHTDTPVSPWYVVESDIKKHA
HHHHHHHCCCCHHHEECCCCCHHHHHHHHHHHHHHHCEEEEECCCCCCEEEEHHHHHHHH
RLNMMAHLLSTIDYADVEKPKVKLPPRPLVSGNYRRPPRELSTYVDDYVATLIAR
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDIPSVDVSTATNDGASSRAKGHRSAAPGRRKISDAVYQAELFRLQTEFVKLQEWARHSG
CCCCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
ARLVVIFEGRDGAGKGGAIKRITEYLNPRVARIAALPAPTDRERGQWYYQRYIAHLPAKG
CEEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCC
EIVLFDRSWYNRAGVEKVMGFCTPQEYVLFLRQTPIFEQMLIDDGILLRKYWFSVSDAEQ
CEEEEECCCCCCCCHHHHHHCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHCCCCCHHH
LRRFKARRNDPVRQWKLSPMDLESVYRWEDYSRAKDEMMVHTDTPVSPWYVVESDIKKHA
HHHHHHHCCCCHHHEECCCCCHHHHHHHHHHHHHHHCEEEEECCCCCCEEEEHHHHHHHH
RLNMMAHLLSTIDYADVEKPKVKLPPRPLVSGNYRRPPRELSTYVDDYVATLIAR
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8199775 [H]