Click here to switch to the map view.

The map label for this gene is ydiJ [C]

Identifier: 148661524

GI number: 148661524

Start: 1953370

End: 1954755

Strand: Direct

Name: ydiJ [C]

Synonym: MRA_1736

Alternate gene names: 148661524

Gene position: 1953370-1954755 (Clockwise)

Preceding gene: 148661521

Following gene: 148661525

Centisome position: 44.19

GC content: 68.33

Gene sequence:

>1386_bases
ATGACCGCGACGCTGACCAAGACGCTGGGTTCCCTCGACGATTTCAGGGGAACGCTTTGTGTCCCCGGTGATCCGGACTA
CCCCAGGGTGCGGGCCATCTGGAACGGGCAGGTGGCCCGCGAACCGGCCTTGATCGCCACGTGCCACGACGCGTGCGATG
TCCGAACGGTGCTGCGGCGCGCGGTGGACGCCGGGATGGTGACCGCGGTACGTGGCGGCGGGCACAACGTGGCCGGCACC
GCGCTGTGCGACGGCGGCGTGGTGATCGACCTCTCGGCGATGCGGGCCGTCTCGCTGGATCCAGCGACTGGGCGGGTACG
GGTGCAGGGTGGTGCCACGCTCGCCGATTTGGACCACGCCACGGTCCCGTTCGCCCGGGTGGCCCCCGCCGGGATCGTCA
CCACCACCGGTGTCGGCGGGCTGACGTTGGGCGGCGGGGTGGGTTGGACGACTCGACGTTTCGGACTGAGCTGCGACAAC
CTGGTCGCGGTGCGGCTAGTCACCGCCGCCGGCGACTACCTAAGCGTCGACGACGAGCGCGACCCGGAGCTGATGTGGGG
CCTGCGGGGCGGGGGCGGCAATTTCGGCATTGTCACTGAATTCGAATTCGCCACCCATCCGTTCGGTCCGGTCGCCGTGG
CCGGCTTCGTCGTCTACCGGCTGGATGACGGGCCCGCGGTGCTTCGCGGCTACCGGCAGTTCGCCGCTGCGGCACCCGAG
GAGGTGACCACGATCGTGGTCTTGCGCCACGCCCCGCCGGCACCGTGGATTCCCGTTGACCAGCGCGGCAAGCCGGTGGT
CATGATCGGCGCCGTCCACACCGGGAGCATCCAGACCGGGATCGAAGCGCTGCGACCGGTCAAGTCCCTCGCCAGACCCG
TCGCCGACACCGTGTGGCCGACCCCGTTCCTGGCCCACCAGGCGGTGCTGGACGCCTCCAACCCGGCCGGTCACCGCTAC
TACTGGAAATCCGACCACTTGGCCGAGCTGAACGACGAGGCCATCGACTTGCTAGTTGAGCAGACGGCGCAGCTGTCCTC
GCCGGACAGCCTCATCGGAATCTTCCAGCTCGGCGGCGCCGCCGCTCGCGGCGGTGAGCGTTCCTGCTTCCCGAGCCGGC
ACGCGCGATTCATGGTCAACTACGCCACCCATTGGACCGAGGCCCGCGAGGACGACCTTCACCGCCAATGGACCCGCGAC
GCGATCGAGGCGCTGGCCCCGTACGGGCTGGGCACCGCGTATGTGAACTTCACCGCCGACGACGCACCGATGCACGTCGA
AACACTTTACAGCACAACGGAGTTCAGTCGTTTGGTGACCCTCAAGAACCGACTCGACCCGGACAACGTGTTCCGCAATA
ACCACAACATCCGCCCCTCGGCATGA

Upstream 100 bases:

>100_bases
GACACCAGGCTAGTCGCCATCCCTGGCTGCGTGGTTCGGAATTCGAACTTCCCGCACCCCCTGTGGGAGGCGTAACGCTT
GGTGCTGGAGGTGAGAGGCG

Downstream 100 bases:

>100_bases
GGGGGCCCAAGTTGACCGTAGGAAGGACGATCATGGACCTCTATTCAAACCTCGTCGAAGCCGAACAACGCCTGGTCGCG
CTGGTTTCGTCGATAGAAGC

Product: oxidoreductase

Products: NA

Alternate protein names: 6-HDNO [H]

Number of amino acids: Translated: 461; Mature: 460

Protein sequence:

>461_residues
MTATLTKTLGSLDDFRGTLCVPGDPDYPRVRAIWNGQVAREPALIATCHDACDVRTVLRRAVDAGMVTAVRGGGHNVAGT
ALCDGGVVIDLSAMRAVSLDPATGRVRVQGGATLADLDHATVPFARVAPAGIVTTTGVGGLTLGGGVGWTTRRFGLSCDN
LVAVRLVTAAGDYLSVDDERDPELMWGLRGGGGNFGIVTEFEFATHPFGPVAVAGFVVYRLDDGPAVLRGYRQFAAAAPE
EVTTIVVLRHAPPAPWIPVDQRGKPVVMIGAVHTGSIQTGIEALRPVKSLARPVADTVWPTPFLAHQAVLDASNPAGHRY
YWKSDHLAELNDEAIDLLVEQTAQLSSPDSLIGIFQLGGAAARGGERSCFPSRHARFMVNYATHWTEAREDDLHRQWTRD
AIEALAPYGLGTAYVNFTADDAPMHVETLYSTTEFSRLVTLKNRLDPDNVFRNNHNIRPSA

Sequences:

>Translated_461_residues
MTATLTKTLGSLDDFRGTLCVPGDPDYPRVRAIWNGQVAREPALIATCHDACDVRTVLRRAVDAGMVTAVRGGGHNVAGT
ALCDGGVVIDLSAMRAVSLDPATGRVRVQGGATLADLDHATVPFARVAPAGIVTTTGVGGLTLGGGVGWTTRRFGLSCDN
LVAVRLVTAAGDYLSVDDERDPELMWGLRGGGGNFGIVTEFEFATHPFGPVAVAGFVVYRLDDGPAVLRGYRQFAAAAPE
EVTTIVVLRHAPPAPWIPVDQRGKPVVMIGAVHTGSIQTGIEALRPVKSLARPVADTVWPTPFLAHQAVLDASNPAGHRY
YWKSDHLAELNDEAIDLLVEQTAQLSSPDSLIGIFQLGGAAARGGERSCFPSRHARFMVNYATHWTEAREDDLHRQWTRD
AIEALAPYGLGTAYVNFTADDAPMHVETLYSTTEFSRLVTLKNRLDPDNVFRNNHNIRPSA
>Mature_460_residues
TATLTKTLGSLDDFRGTLCVPGDPDYPRVRAIWNGQVAREPALIATCHDACDVRTVLRRAVDAGMVTAVRGGGHNVAGTA
LCDGGVVIDLSAMRAVSLDPATGRVRVQGGATLADLDHATVPFARVAPAGIVTTTGVGGLTLGGGVGWTTRRFGLSCDNL
VAVRLVTAAGDYLSVDDERDPELMWGLRGGGGNFGIVTEFEFATHPFGPVAVAGFVVYRLDDGPAVLRGYRQFAAAAPEE
VTTIVVLRHAPPAPWIPVDQRGKPVVMIGAVHTGSIQTGIEALRPVKSLARPVADTVWPTPFLAHQAVLDASNPAGHRYY
WKSDHLAELNDEAIDLLVEQTAQLSSPDSLIGIFQLGGAAARGGERSCFPSRHARFMVNYATHWTEAREDDLHRQWTRDA
IEALAPYGLGTAYVNFTADDAPMHVETLYSTTEFSRLVTLKNRLDPDNVFRNNHNIRPSA

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012951
- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016168
- InterPro:   IPR006094
- InterPro:   IPR006093 [H]

Pfam domain/function: PF08031 BBE; PF01565 FAD_binding_4 [H]

EC number: =1.5.3.6 [H]

Molecular weight: Translated: 49373; Mature: 49242

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS00589 PTS_HPR_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATLTKTLGSLDDFRGTLCVPGDPDYPRVRAIWNGQVAREPALIATCHDACDVRTVLRR
CCCCHHHHHCCHHHCCCCEECCCCCCCCEEEEEECCCCCCCCEEEEECCHHHHHHHHHHH
AVDAGMVTAVRGGGHNVAGTALCDGGVVIDLSAMRAVSLDPATGRVRVQGGATLADLDHA
HHCCCCEEEEECCCCCCCEEEEECCCEEEEEEHHEEEECCCCCCEEEEECCCEEECCCCC
TVPFARVAPAGIVTTTGVGGLTLGGGVGWTTRRFGLSCDNLVAVRLVTAAGDYLSVDDER
CCCHHHHCCCCEEEECCCCCEEECCCCCCCHHCCCCCCCCEEEEEEEECCCCEEECCCCC
DPELMWGLRGGGGNFGIVTEFEFATHPFGPVAVAGFVVYRLDDGPAVLRGYRQFAAAAPE
CCCEEEEEECCCCCEEEEEEEECCCCCCCHHEEEEEEEEEECCCHHHHHHHHHHHHCCCC
EVTTIVVLRHAPPAPWIPVDQRGKPVVMIGAVHTGSIQTGIEALRPVKSLARPVADTVWP
CEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
TPFLAHQAVLDASNPAGHRYYWKSDHLAELNDEAIDLLVEQTAQLSSPDSLIGIFQLGGA
CHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCH
AARGGERSCFPSRHARFMVNYATHWTEAREDDLHRQWTRDAIEALAPYGLGTAYVNFTAD
HCCCCCCCCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
DAPMHVETLYSTTEFSRLVTLKNRLDPDNVFRNNHNIRPSA
CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TATLTKTLGSLDDFRGTLCVPGDPDYPRVRAIWNGQVAREPALIATCHDACDVRTVLRR
CCCHHHHHCCHHHCCCCEECCCCCCCCEEEEEECCCCCCCCEEEEECCHHHHHHHHHHH
AVDAGMVTAVRGGGHNVAGTALCDGGVVIDLSAMRAVSLDPATGRVRVQGGATLADLDHA
HHCCCCEEEEECCCCCCCEEEEECCCEEEEEEHHEEEECCCCCCEEEEECCCEEECCCCC
TVPFARVAPAGIVTTTGVGGLTLGGGVGWTTRRFGLSCDNLVAVRLVTAAGDYLSVDDER
CCCHHHHCCCCEEEECCCCCEEECCCCCCCHHCCCCCCCCEEEEEEEECCCCEEECCCCC
DPELMWGLRGGGGNFGIVTEFEFATHPFGPVAVAGFVVYRLDDGPAVLRGYRQFAAAAPE
CCCEEEEEECCCCCEEEEEEEECCCCCCCHHEEEEEEEEEECCCHHHHHHHHHHHHCCCC
EVTTIVVLRHAPPAPWIPVDQRGKPVVMIGAVHTGSIQTGIEALRPVKSLARPVADTVWP
CEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
TPFLAHQAVLDASNPAGHRYYWKSDHLAELNDEAIDLLVEQTAQLSSPDSLIGIFQLGGA
CHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCH
AARGGERSCFPSRHARFMVNYATHWTEAREDDLHRQWTRDAIEALAPYGLGTAYVNFTAD
HCCCCCCCCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
DAPMHVETLYSTTEFSRLVTLKNRLDPDNVFRNNHNIRPSA
CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3622516; 2680607; 2115879 [H]