Click here to switch to the map view.

The map label for this gene is ydcR [C]

Identifier: 148660939

GI number: 148660939

Start: 1280965

End: 1281330

Strand: Direct

Name: ydcR [C]

Synonym: MRA_1162

Alternate gene names: 148660939

Gene position: 1280965-1281330 (Clockwise)

Preceding gene: 148660937

Following gene: 148660942

Centisome position: 28.98

GC content: 67.76

Gene sequence:

>366_bases
GTGGAGCTGCGGGATTGGTTACGGGTCGACGTGAAGGCGGGAAAGCCGTTGTTCGACCAGCTCAGAACCCAGGTGATCGA
CGGAGTCCGCGCCGGCGCATTGCCGCCCGGCACCCGGCTCCCGACGGTGCGTGACTTGGCCGGGCAGCTGGGCGTGGCGG
CCAATACCGTGGCCCGCGCCTACCGCGAGTTGGAATCGGCGGCGATCGTCGAAACGCGGGGACGCTTCGGCACTTTCATT
TCCCGCTTCGATCCGACCGACGCCGCGATGGCTGCCGCGGCCAAGGAATATGTCGGCGTGGCGCGAGCGCTGGGGCTGAC
GAAGTCCGATGCGATGCGCTATCTCACCCACGTGCCGGACGACTGA

Upstream 100 bases:

>100_bases
GCGGAACGTCGGTACACCGCTTTCCGCGGAGATCCCCGCGCCGCTGAGCACCGCCACTCGCATCCCACAAACATAGCTGT
GCTTGGTAGATACTGGGTAC

Downstream 100 bases:

>100_bases
ATTCCAGCAAAGTCAGGCACGGCCGCAGCGGATCGAATACGGGCAGGCGGTAAACGGTCGACAGCGCCATATTGACCCAC
AGGCCACGGCCCGGTGGCAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; GntR-Family Transcriptional Regulator; Regulatory Protein GntR HTH; Transcriptional Regulator; Transcriptional Regulator-Like Protein; Regulator; Gntr Family Transcriptional Regulator; Transcriptional Regulatory Protein

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELESAAIVETRGRFGTFI
SRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPDD

Sequences:

>Translated_121_residues
MELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELESAAIVETRGRFGTFI
SRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPDD
>Mature_121_residues
MELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARAYRELESAAIVETRGRFGTFI
SRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPDD

Specific function: Unknown

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13114; Mature: 13114

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA
CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHHH
YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPD
HHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
D
C
>Mature Secondary Structure
MELRDWLRVDVKAGKPLFDQLRTQVIDGVRAGALPPGTRLPTVRDLAGQLGVAANTVARA
CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHHHHH
YRELESAAIVETRGRFGTFISRFDPTDAAMAAAAKEYVGVARALGLTKSDAMRYLTHVPD
HHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
D
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA