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The map label for this gene is ydcM [C]

Identifier: 148660701

GI number: 148660701

Start: 1028993

End: 1030645

Strand: Direct

Name: ydcM [C]

Synonym: MRA_0930

Alternate gene names: 148660701

Gene position: 1028993-1030645 (Clockwise)

Preceding gene: 148660700

Following gene: 148660707

Centisome position: 23.28

GC content: 67.27

Gene sequence:

>1653_bases
ATGATCGTCAGGATGCGTAGCTGCGCTCAGGCCGCGAAGGTGGCCGAGGCCACCGGTGGTGTGCAGCTGGCGGGCAAGCC
GAAACCCGATGGGACACCGACGTTCTCCCGGTATGTGGAGATCGGCGTGGATTTTGAGGCGCACCGGCCGGTGGTGGAGT
CGGTTTCGGTGCTGTTCGAGCTTTATGACGGCGACGCCAACAGTTATGCCGCGACCGGGGGGCCGGGTGCCCAACTGCCG
TCGGGCTGGATGGTCACGGCGGCGAAATTCGAGGTCGAGTGGCCCGCCGACCCGCAGCGGGCGGGTTTGGTGCGTTCACA
TTTCGGCGCCCGCCGCAAAGCTTTCAACTGGGGCCTGGCCCAGGTGAAGGCCGACCTCGACGCCAAAGCCGCTGATCCGG
CACATGAGTCGGTGGACTGGGACTTGAAGTCGCTGCGATGGGCGTGGAACCGAGCCAAAGATGACGTGGCGCCGTGGTGG
GCCGAGAATTCCAAGGAGTGCTACTCGTCGGGGTTGGCCGATCTGGCCCAGGGCCTGGCTAATTGGAAAGCTGGCAAGAA
CGGGACCCGCAAAGGCCGGCGGGTGGGCTTCCCGCGATTCAAATCCGGGCGGCGTGATCCTGGCAGGGTGCGGTTCACCA
CCGGCACCATGCGCATAGAGGATGACCGGCGCACGATCACGGTCCCGGTGATCGGGCCGCTGCGGGCCAAGGAGAACACC
CGCCGGGTGCAACGCCACCTCGTGAGCGGGCGCGCGCAGATCCTGAACATGACCTTGTCGCAGCGGTGGGGCCGGTTATT
CGTGGCGGTCTGCTACGCGCTGCGCACCCCGACCACCAGATCACCGCTCACCCAGCCGACTGTGCGCGCCGGAATGGACC
TGGGAGTCCGGACCCTGGCCACGGTCGCCACCCTCGACACCGCCACCGGCGAGCAGACCATCATCGAATACCCAAACCCG
GCCCCGCTCAAGGCGACACTCGTCGCCCGTCGCAGGGCCGGCCGAGAACTTTCCCGCCGCATCCCCGGCTCCCATGGGCA
TCGGGCAGTGAAAGCCAAGCTGGCCCGCCTGGATCGCCGGTGCGTGCACCTACGGCGGGAAGCAGCCCACCAGCTCACCA
CCGAGTTGGCGGGCACCTATGGCCAGGTCGTGATCGAAGACCTCGACGTGGCCGCGATGAAACGCAGCATGCGCCGGCGG
GCGTTTCGCCGATCGGTCTCCGATGCCGCAATGGGTTTGGTCGCGCCGCAGCTGGCTTACAAAACGGCCAAGTGCAGCGG
CGTGCTGACGGTGGCGGACCGCTGGTTTGCCTCCAGCCAAATCCACCACGGCTGCACCAGCCCCGACGGCACACCGTGCC
GGCTGCAAGGCAAGGGCCGCATCGACAAACACCTGCTCTGCCCTGTAACGGGCGAGGTAGTCGACCGCGACAGAAACGCT
GCTTTGAATCTCCGTGACTGGCCGGATAACGCCAGTCGTGGTCCAGTCGGGACCACGGCCCCATCGGCACCCGGGCCAAC
CACCACGGTTGGTACAGGCCATGGCGCGGACACCGGATCATCCGGCGCCGGCGGAGCATCCGTAAGACCCCGCCCACGCA
GGGCCGGACGCGGCGAGGCCAAAACCCAAACCCCGCAAGGGGACGCCGCATGA

Upstream 100 bases:

>100_bases
TCTTGACCGGTATGTGCGCGCGGCTGTACGGGCGTCGCGGTGCGCGCAACCGGGCGATGCGTGCGGTCACGGAGGCCAAG
CGTGAGCCGGGGGCGGGGTG

Downstream 100 bases:

>100_bases
GAGTGCAACTAAAACACACTCAACGGCAACGGTGTCGTCGGGATGCCAGCGCCGCCCACGCATCTTCACTTGATCGAGAT
CGATCAGGTGATCGGCCGCT

Product: IS1535 transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 550; Mature: 550

Protein sequence:

>550_residues
MIVRMRSCAQAAKVAEATGGVQLAGKPKPDGTPTFSRYVEIGVDFEAHRPVVESVSVLFELYDGDANSYAATGGPGAQLP
SGWMVTAAKFEVEWPADPQRAGLVRSHFGARRKAFNWGLAQVKADLDAKAADPAHESVDWDLKSLRWAWNRAKDDVAPWW
AENSKECYSSGLADLAQGLANWKAGKNGTRKGRRVGFPRFKSGRRDPGRVRFTTGTMRIEDDRRTITVPVIGPLRAKENT
RRVQRHLVSGRAQILNMTLSQRWGRLFVAVCYALRTPTTRSPLTQPTVRAGMDLGVRTLATVATLDTATGEQTIIEYPNP
APLKATLVARRRAGRELSRRIPGSHGHRAVKAKLARLDRRCVHLRREAAHQLTTELAGTYGQVVIEDLDVAAMKRSMRRR
AFRRSVSDAAMGLVAPQLAYKTAKCSGVLTVADRWFASSQIHHGCTSPDGTPCRLQGKGRIDKHLLCPVTGEVVDRDRNA
ALNLRDWPDNASRGPVGTTAPSAPGPTTTVGTGHGADTGSSGAGGASVRPRPRRAGRGEAKTQTPQGDAA

Sequences:

>Translated_550_residues
MIVRMRSCAQAAKVAEATGGVQLAGKPKPDGTPTFSRYVEIGVDFEAHRPVVESVSVLFELYDGDANSYAATGGPGAQLP
SGWMVTAAKFEVEWPADPQRAGLVRSHFGARRKAFNWGLAQVKADLDAKAADPAHESVDWDLKSLRWAWNRAKDDVAPWW
AENSKECYSSGLADLAQGLANWKAGKNGTRKGRRVGFPRFKSGRRDPGRVRFTTGTMRIEDDRRTITVPVIGPLRAKENT
RRVQRHLVSGRAQILNMTLSQRWGRLFVAVCYALRTPTTRSPLTQPTVRAGMDLGVRTLATVATLDTATGEQTIIEYPNP
APLKATLVARRRAGRELSRRIPGSHGHRAVKAKLARLDRRCVHLRREAAHQLTTELAGTYGQVVIEDLDVAAMKRSMRRR
AFRRSVSDAAMGLVAPQLAYKTAKCSGVLTVADRWFASSQIHHGCTSPDGTPCRLQGKGRIDKHLLCPVTGEVVDRDRNA
ALNLRDWPDNASRGPVGTTAPSAPGPTTTVGTGHGADTGSSGAGGASVRPRPRRAGRGEAKTQTPQGDAA
>Mature_550_residues
MIVRMRSCAQAAKVAEATGGVQLAGKPKPDGTPTFSRYVEIGVDFEAHRPVVESVSVLFELYDGDANSYAATGGPGAQLP
SGWMVTAAKFEVEWPADPQRAGLVRSHFGARRKAFNWGLAQVKADLDAKAADPAHESVDWDLKSLRWAWNRAKDDVAPWW
AENSKECYSSGLADLAQGLANWKAGKNGTRKGRRVGFPRFKSGRRDPGRVRFTTGTMRIEDDRRTITVPVIGPLRAKENT
RRVQRHLVSGRAQILNMTLSQRWGRLFVAVCYALRTPTTRSPLTQPTVRAGMDLGVRTLATVATLDTATGEQTIIEYPNP
APLKATLVARRRAGRELSRRIPGSHGHRAVKAKLARLDRRCVHLRREAAHQLTTELAGTYGQVVIEDLDVAAMKRSMRRR
AFRRSVSDAAMGLVAPQLAYKTAKCSGVLTVADRWFASSQIHHGCTSPDGTPCRLQGKGRIDKHLLCPVTGEVVDRDRNA
ALNLRDWPDNASRGPVGTTAPSAPGPTTTVGTGHGADTGSSGAGGASVRPRPRRAGRGEAKTQTPQGDAA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=398, Percent_Identity=26.8844221105528, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 59630; Mature: 59630

Theoretical pI: Translated: 11.12; Mature: 11.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVRMRSCAQAAKVAEATGGVQLAGKPKPDGTPTFSRYVEIGVDFEAHRPVVESVSVLFE
CEEECHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHEEECCCCHHCCCHHHHHHHHHH
LYDGDANSYAATGGPGAQLPSGWMVTAAKFEVEWPADPQRAGLVRSHFGARRKAFNWGLA
HHCCCCCCEECCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHH
QVKADLDAKAADPAHESVDWDLKSLRWAWNRAKDDVAPWWAENSKECYSSGLADLAQGLA
HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
NWKAGKNGTRKGRRVGFPRFKSGRRDPGRVRFTTGTMRIEDDRRTITVPVIGPLRAKENT
HCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEECCCEEEEEEECCCCCCCHHH
RRVQRHLVSGRAQILNMTLSQRWGRLFVAVCYALRTPTTRSPLTQPTVRAGMDLGVRTLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCHHHHH
TVATLDTATGEQTIIEYPNPAPLKATLVARRRAGRELSRRIPGSHGHRAVKAKLARLDRR
HHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
CVHLRREAAHQLTTELAGTYGQVVIEDLDVAAMKRSMRRRAFRRSVSDAAMGLVAPQLAY
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTAKCSGVLTVADRWFASSQIHHGCTSPDGTPCRLQGKGRIDKHLLCPVTGEVVDRDRNA
HHHHCCEEEEEHHHHHHHCHHCCCCCCCCCCEEEEECCCCCCCEEECCCCHHHHCCCCCC
ALNLRDWPDNASRGPVGTTAPSAPGPTTTVGTGHGADTGSSGAGGASVRPRPRRAGRGEA
EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KTQTPQGDAA
CCCCCCCCCC
>Mature Secondary Structure
MIVRMRSCAQAAKVAEATGGVQLAGKPKPDGTPTFSRYVEIGVDFEAHRPVVESVSVLFE
CEEECHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHEEECCCCHHCCCHHHHHHHHHH
LYDGDANSYAATGGPGAQLPSGWMVTAAKFEVEWPADPQRAGLVRSHFGARRKAFNWGLA
HHCCCCCCEECCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHH
QVKADLDAKAADPAHESVDWDLKSLRWAWNRAKDDVAPWWAENSKECYSSGLADLAQGLA
HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
NWKAGKNGTRKGRRVGFPRFKSGRRDPGRVRFTTGTMRIEDDRRTITVPVIGPLRAKENT
HCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEECCCEEEEEEECCCCCCCHHH
RRVQRHLVSGRAQILNMTLSQRWGRLFVAVCYALRTPTTRSPLTQPTVRAGMDLGVRTLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCHHHHH
TVATLDTATGEQTIIEYPNPAPLKATLVARRRAGRELSRRIPGSHGHRAVKAKLARLDRR
HHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
CVHLRREAAHQLTTELAGTYGQVVIEDLDVAAMKRSMRRRAFRRSVSDAAMGLVAPQLAY
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KTAKCSGVLTVADRWFASSQIHHGCTSPDGTPCRLQGKGRIDKHLLCPVTGEVVDRDRNA
HHHHCCEEEEEHHHHHHHCHHCCCCCCCCCCEEEEECCCCCCCEEECCCCHHHHCCCCCC
ALNLRDWPDNASRGPVGTTAPSAPGPTTTVGTGHGADTGSSGAGGASVRPRPRRAGRGEA
EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
KTQTPQGDAA
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]