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The map label for this gene is cspB [H]

Identifier: 148660648

GI number: 148660648

Start: 969204

End: 969611

Strand: Direct

Name: cspB [H]

Synonym: MRA_0878

Alternate gene names: 148660648

Gene position: 969204-969611 (Clockwise)

Preceding gene: 148660643

Following gene: 148660650

Centisome position: 21.93

GC content: 67.4

Gene sequence:

>408_bases
GTGCCGACCGGCAAGGTGAAGTGGTACGACCCCGACAAGGGGTTCGGCTTCCTGTCACAGGAGGGTGGCGAGGATGTCTA
CGTCCGCTCCTCGGCGTTGCCCACGGGTGTCGAGGCACTCAAAGCCGGGCAGCGGGTGGAATTTGGCATCGCCTCCGGGC
GGCGCGGACCGCAGGCATTGAGTCTCAGATTGATCGAACCGCCGCCCAGCCTCTCCCGGCCGCGCCGTGAGCCGGCGGCC
GAGCACAAGCACAGCCCCGATGAGCTGCACGGCATGGTCGAGGACATGATCACGTTGCTGGAAAGCACCGTGCAGCCGGA
GCTGCGTAAGGGGCGCTACCCGGATCGCAAGACTGCTCGCCGGGTCGCCGAGGTTGTCCGGGCGGTGGCGCGGGAGTTCG
AGTCCTAA

Upstream 100 bases:

>100_bases
GATCCGAGTAGGATCTTCAGATCGTCATCGCGTCCCGCGCAGGCGGGACGCGTCTTCTGTTGCCAATCCGAGCGATCCGT
CAGACAAGCAGGTGAGACCA

Downstream 100 bases:

>100_bases
CGGGGTCGGGTGGTGCGCTGGCCCAATTGCGCCGAGCTGGCAACGCCGCGCCGTTCCAGGGTCACGGTCGGATCGATTCC
GCCGCACTCGGTTTGACGAG

Product: cold-shock domain-contain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQALSLRLIEPPPSLSRPRREPAA
EHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTARRVAEVVRAVAREFES

Sequences:

>Translated_135_residues
MPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQALSLRLIEPPPSLSRPRREPAA
EHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTARRVAEVVRAVAREFES
>Mature_134_residues
PTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQALSLRLIEPPPSLSRPRREPAAE
HKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTARRVAEVVRAVAREFES

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=47.5409836065574, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 15021; Mature: 14890

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL
CCCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCEEECCCCCCCCCCEE
SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR
EEEEECCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHH
RVAEVVRAVAREFES
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
PTGKVKWYDPDKGFGFLSQEGGEDVYVRSSALPTGVEALKAGQRVEFGIASGRRGPQAL
CCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCEEECCCCCCCCCCEE
SLRLIEPPPSLSRPRREPAAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTAR
EEEEECCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHH
RVAEVVRAVAREFES
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8631682 [H]