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The map label for this gene is ykuD [H]

Identifier: 148653993

GI number: 148653993

Start: 2735313

End: 2736512

Strand: Direct

Name: ykuD [H]

Synonym: PsycPRwf_2196

Alternate gene names: 148653993

Gene position: 2735313-2736512 (Clockwise)

Preceding gene: 148653992

Following gene: 148653999

Centisome position: 91.82

GC content: 47.75

Gene sequence:

>1200_bases
ATGTGGTTTATTTCCTCTACGCCTTTGGCAGCTGATGCGCCCATCAAGGCGATGTCTCCTATCAAGCTGCTCAGCTATAC
CATGCTGGGCTTATTCAGCTTAAGCGGCTGCTCTTCTTCTGATGGGAGTAACGCTCAGCTAGACCAAGGCATAGAGGCCG
TGGCTGAGTTTTTTGAATCGGCATCTGCAAACAGTAGCAGTGACTCTGAGTTGGAAATAGCCACTAAGACCGAGCCAGAA
GCTGAGCCTGCCAAGCAGTTGCAGCCGAATATCAGTCAACAGTTCATTGGCGATACGCCCTCTCAATTGCGCTTAGCCAA
AGCCTTTGCGGAGCTGCCTTATAGCGTGGATAATCTGCCTGAAAAAGCTCAGAAAGTGAATGCTGCCCAGTGGACAGAAG
ATGCCATTTTAGATGAAAACTTAATCCTGAAAATACAAGCCTTGCTAAATTACAATCATCACTCAGTGGGCGCCGTCGAT
GGCCGCTTTGGTGAGAATGTGATTAAAGCACTAAAAGTATTTCAAGAAAAACAGGCCATGAAGCCCACCGGCCAATTAGA
CCCTGAAACTTGGGCCAAGCTCACCGAAGACCCAGCGCTTATGTCTCAACCGGTGTTGGTTAACTATACCCTCACCCCTG
AGGATGTAACTTTAATCAAAAACCCTAAAGGTCAACAGTTTACGACTGTCACCGAAGCGGTTGCAGAGAAGTTTCATATG
AGCCAAGGTCTACTTTGGCGACTCAACCCAGACACGCCACTTGAAGCAGGCAACACCATTGTGGTGTACAACCCGTATCA
GCCTAATGAGCAAGAGGTGCACCGAGTGGTGGCCGTCAAAGCCAAAAACCTACTCTATGCTTATAATGATAAAGACGAGC
TGGTCGCAAGCTATCCCACTACTATGGGCAGCGTCTATAAGCCCTCTCCGGATGGGGATTATAAGGTGCTGAGTCGCATC
AAAGATCCAAGCTATAATAAAGACTTTAAAAACCCAAATACGGTCTTGCCACCCGGACCTAACAACCCTGTTGGCCGAGT
GTGGATTGGTATTAATAAACGCAGCTACGGTATTCATGGCTCGCCCAATCCTGAGAAAATTAGCCGTCAAAACTCTTCTG
GCTGTGTCCGTCTCACCAACTGGGATGCCTTAGGCTTATATGGCACCATTGAAGAGGGTGCTAAAGTTGAGTTTTTATAA

Upstream 100 bases:

>100_bases
GGCGGCCTCTTATAAGCTTAAACCATTGGCGACCTAATGTGACCATGGTATAACCAAGATTGGCTTGGATTTAACTTTAA
TAAAAAAAGAGAGTCTACCT

Downstream 100 bases:

>100_bases
CGTACACCATAGCCATTAACCTTAAGTTTTAAACCTCTGTGCCTTGTAAAAAGCCTGACCCTCAATTTGAGCGTCAGGCT
TTTTTGTGGCAACTGATTTT

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: Spore protein YkuD [H]

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MWFISSTPLAADAPIKAMSPIKLLSYTMLGLFSLSGCSSSDGSNAQLDQGIEAVAEFFESASANSSSDSELEIATKTEPE
AEPAKQLQPNISQQFIGDTPSQLRLAKAFAELPYSVDNLPEKAQKVNAAQWTEDAILDENLILKIQALLNYNHHSVGAVD
GRFGENVIKALKVFQEKQAMKPTGQLDPETWAKLTEDPALMSQPVLVNYTLTPEDVTLIKNPKGQQFTTVTEAVAEKFHM
SQGLLWRLNPDTPLEAGNTIVVYNPYQPNEQEVHRVVAVKAKNLLYAYNDKDELVASYPTTMGSVYKPSPDGDYKVLSRI
KDPSYNKDFKNPNTVLPPGPNNPVGRVWIGINKRSYGIHGSPNPEKISRQNSSGCVRLTNWDALGLYGTIEEGAKVEFL

Sequences:

>Translated_399_residues
MWFISSTPLAADAPIKAMSPIKLLSYTMLGLFSLSGCSSSDGSNAQLDQGIEAVAEFFESASANSSSDSELEIATKTEPE
AEPAKQLQPNISQQFIGDTPSQLRLAKAFAELPYSVDNLPEKAQKVNAAQWTEDAILDENLILKIQALLNYNHHSVGAVD
GRFGENVIKALKVFQEKQAMKPTGQLDPETWAKLTEDPALMSQPVLVNYTLTPEDVTLIKNPKGQQFTTVTEAVAEKFHM
SQGLLWRLNPDTPLEAGNTIVVYNPYQPNEQEVHRVVAVKAKNLLYAYNDKDELVASYPTTMGSVYKPSPDGDYKVLSRI
KDPSYNKDFKNPNTVLPPGPNNPVGRVWIGINKRSYGIHGSPNPEKISRQNSSGCVRLTNWDALGLYGTIEEGAKVEFL
>Mature_399_residues
MWFISSTPLAADAPIKAMSPIKLLSYTMLGLFSLSGCSSSDGSNAQLDQGIEAVAEFFESASANSSSDSELEIATKTEPE
AEPAKQLQPNISQQFIGDTPSQLRLAKAFAELPYSVDNLPEKAQKVNAAQWTEDAILDENLILKIQALLNYNHHSVGAVD
GRFGENVIKALKVFQEKQAMKPTGQLDPETWAKLTEDPALMSQPVLVNYTLTPEDVTLIKNPKGQQFTTVTEAVAEKFHM
SQGLLWRLNPDTPLEAGNTIVVYNPYQPNEQEVHRVVAVKAKNLLYAYNDKDELVASYPTTMGSVYKPSPDGDYKVLSRI
KDPSYNKDFKNPNTVLPPGPNNPVGRVWIGINKRSYGIHGSPNPEKISRQNSSGCVRLTNWDALGLYGTIEEGAKVEFL

Specific function: Probable enzyme that may play an important role in cell wall biology [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Spore wall (Probable). Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 43861; Mature: 43861

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWFISSTPLAADAPIKAMSPIKLLSYTMLGLFSLSGCSSSDGSNAQLDQGIEAVAEFFES
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
ASANSSSDSELEIATKTEPEAEPAKQLQPNISQQFIGDTPSQLRLAKAFAELPYSVDNLP
CCCCCCCCCEEEEEECCCCCCCHHHHHCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCH
EKAQKVNAAQWTEDAILDENLILKIQALLNYNHHSVGAVDGRFGENVIKALKVFQEKQAM
HHHHHCCHHHCCHHHHCCCCCEEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
KPTGQLDPETWAKLTEDPALMSQPVLVNYTLTPEDVTLIKNPKGQQFTTVTEAVAEKFHM
CCCCCCCHHHHHHHCCCHHHHCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHH
SQGLLWRLNPDTPLEAGNTIVVYNPYQPNEQEVHRVVAVKAKNLLYAYNDKDELVASYPT
CCCCEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHEECCCEEEEECCCHHEEECCCC
TMGSVYKPSPDGDYKVLSRIKDPSYNKDFKNPNTVLPPGPNNPVGRVWIGINKRSYGIHG
CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
SPNPEKISRQNSSGCVRLTNWDALGLYGTIEEGAKVEFL
CCCHHHHHCCCCCCEEEEECCCCCCEEEECCCCCEEECC
>Mature Secondary Structure
MWFISSTPLAADAPIKAMSPIKLLSYTMLGLFSLSGCSSSDGSNAQLDQGIEAVAEFFES
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
ASANSSSDSELEIATKTEPEAEPAKQLQPNISQQFIGDTPSQLRLAKAFAELPYSVDNLP
CCCCCCCCCEEEEEECCCCCCCHHHHHCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCH
EKAQKVNAAQWTEDAILDENLILKIQALLNYNHHSVGAVDGRFGENVIKALKVFQEKQAM
HHHHHCCHHHCCHHHHCCCCCEEEEEEHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
KPTGQLDPETWAKLTEDPALMSQPVLVNYTLTPEDVTLIKNPKGQQFTTVTEAVAEKFHM
CCCCCCCHHHHHHHCCCHHHHCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHH
SQGLLWRLNPDTPLEAGNTIVVYNPYQPNEQEVHRVVAVKAKNLLYAYNDKDELVASYPT
CCCCEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHEECCCEEEEECCCHHEEECCCC
TMGSVYKPSPDGDYKVLSRIKDPSYNKDFKNPNTVLPPGPNNPVGRVWIGINKRSYGIHG
CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
SPNPEKISRQNSSGCVRLTNWDALGLYGTIEEGAKVEFL
CCCHHHHHCCCCCCEEEEECCCCCCEEEECCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]