| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is yhgF [C]
Identifier: 148653919
GI number: 148653919
Start: 2645245
End: 2647794
Strand: Direct
Name: yhgF [C]
Synonym: PsycPRwf_2122
Alternate gene names: 148653919
Gene position: 2645245-2647794 (Clockwise)
Preceding gene: 148653917
Following gene: 148653921
Centisome position: 88.8
GC content: 48.51
Gene sequence:
>2550_bases ATGCCAACCACATTTCTTAACTTCGATACGGATATGAACCAAACCGATACTACAACTGCCAACACCCCTACCAGCCAAAG CAGCAGCAATTTGCCGGCTGATGTCATTGCCAACATCCATAATAAGCTTGCAAAAGAGCTGGGTATTAAGCCTGCGCAAG TCGATGCGTTTGTTAAGCTTTACGACGAAGGTGCTACGGTGCCGTTCATCGCTCGTTATCGTAAAGAAAAAACACAAGGC TTAGACGACAGCCAATTACGTGCTTTGGAAAAAGGTTTAAACTACGAGCGTGACATGGCCTCACGTCGTGCTAAGATTCT TGAGCTACTGCAAAGCCAAGGTAACTTAACCGAAGCGCTGCAATCTCGAATTGAGCAGGCCACCTCTAAGCTTGAATTAG AGGACATCTACCTGCCTTATCGCCCTCGCCGCCGCTCATTGGCTGCTAAAGCCCGTGCTGCAGGTCTGGATAAGGTTGCT AAAACTCTACTCAATAATGAAGTCACGCCACTTGACGCCCTAAGCGATTACAGTCTGCCTGAGACTATCACTGATGATAC CGGCGCTGAGATTGACGTTGATTTTTCAGATACCGAAAAACAATTAGCCGGCGTGGAAGCCATTATCATCGATGGCTGGA CCCAAGAGCTTGAGCTACTTGATAACTTACGTAGCGGTTTTGCTAAAACTGCCACTATCAATTCAAGCCTAGCTTCTGAC GAAAAACGTGAGGTGGGTGAGAAGTTCGCTGATTATTTTGAGCATAGCGAAAGCTTAGCACGCCTGCCCAATCATCGCCT GCTTGCGATGCTACGTGGTCGTCAAGAAAATGTATTGGTGCTTAAAGTCGATGGTGAAGATGCTCCTTTTGTCGATAAAG TTATCAATAAATTTGAGCTTGAAAATACCAAGCCTCAAGAGCGTCATGACTTTTTAATAACTGCTGCCAACAGCTTGTGG AAGGATAAGTGGCGCCCGCATTTAGAGCACCGCTTATTGACCGAAAAACGTCTGGCCGCAGAAGCTGATGCTATTGATGT CTTCGCCAGTAACTTACAGCACCTATTAATGGCCGCCCCTGCCGGCCGTAAAGTTATTTTAGGTGTGGATCCTGGTATTC GTCATGGTGTAAAAATGGCGGTGATCGATGCCCAAGGTCAAGTCATGCAAGATGGCGAAGGTAAGCCGGCCATCGCGACA GTCTATCCATTTGCCCCCGATAATAAAATGGATGAGGCTAAAGCAACTATTGCTCAGCTGTTAAAAGACCATCAGGTAGA GCTTGTGGCAATCGGCAATGGTACGGCCAGCCGTGAAACCGATGCCATGATCAAAGAGCTGATTGAAGCCGATGAGACCA TCACAGCCAAAGCCGTCGTGGTCAATGAATCAGGCGCTTCTGTGTATTCTGCCAGCGAGCTTGCCAGTGATGAGCTCGCT GATTTAGACGTCTCTATCCGCGGTGCAGTGTCTATCGCCCGCCGTCTACAAGACCCCTTATCAGAGCTGGTTAAAGTTGA GCCAAAAGCCATTGGCGTGGGTCAATATCAGCATGATGTGAACCAAGCTCAGCTGTCTGACAGCTTAGATAAAGTGACGC AAGACTGTGTGAACGCAGTGGGTGTGGATGTCAATACCGCAAGCCCTGCTATCTTAGCCCACATTGCCGGTCTAAACCGT AACGTCGCTCAGCAAATTGTCAACTACCGCAAAGAACATGGTGCATTTACTAACCGCGAGCAGCTAAAAGATGTGCCCAG ACTTGGGGTAAAAACCTTTGAACAGGCAGCGGGTTTCCTACGCATTCGTGATGGCGAAGAGCCGCTGGATGCTACCGGTG TGCATCCAGAGAGCTATGACTTGGTGAAAGCCCTATTAGACAAATCTGGCAAGTCAATTGCTGACGTACTGGGTAATGAC AGCCTTATCAATACGCTAAGCACCGATGGTATTGACGCAGCCAACGATGACAACATCAGCATTGCCGCCATCAAACAAGA GCTTGCTAAGCCTGCTCATGACCCTCGCCCTGAGTTCAAAACAGCTCAGTTTAGAGACGACGTAAACAGCGTAAGCGATC TAGAAGAAGGCATGCAGCTTGAAGGCGTGGTTACCAATGTGACTGGTTTTGGCTGCTTCGTGGATGTTGGCGTACATCAA GATGGCTTAGTGCATATCTCTGAGATGGCCAACGACTTTGTTGAAGACCCCATGAACTTGGTTAAACCCGGTGATATCGT CAGCGTTCGTGTTATTTCAATTGATGCCAAACGCAATCGTATCGGCTTTAGCATGAAATCAGAAGATGCCGCTTCGGCCA AACGTGCTACTAGCCCGCAGCGCAGTACTGACAAAAACGCTGAGAATGCTGCGACTAAGCCGGCCAAGGCGCGCAAAAAT AGCCGTGCTAAACCTGCCAATAAAGCCGCTCGTACTGCCAATACCCGCAGTGATAAGCCAAAGCCTAGCAAATCTGCTAA GCCCAAAGCTGAAGAGGCTAAAGTAGGCTCACTCGGTGCCTTGCTACAGCAAGCCGGGTTAAAAAAATAA
Upstream 100 bases:
>100_bases ACATAGTAATGCTGTATGTGTTTGTTAATTTAAGCAGACAAAATCACATAAATAAACATTAATAAGCAAAACCATTTTTA TTATCTCAGCTTTTGCTATA
Downstream 100 bases:
>100_bases CCTAGCATTCATTGCTGCTTTGCAATCAATATCTAAATTGACTTCCTCCCCTCCCTAAAGTGAGGGGATTCCTACAGCTA GACGGTCAAGCCCGACCGCA
Product: RNA-binding S1 domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 849; Mature: 848
Protein sequence:
>849_residues MPTTFLNFDTDMNQTDTTTANTPTSQSSSNLPADVIANIHNKLAKELGIKPAQVDAFVKLYDEGATVPFIARYRKEKTQG LDDSQLRALEKGLNYERDMASRRAKILELLQSQGNLTEALQSRIEQATSKLELEDIYLPYRPRRRSLAAKARAAGLDKVA KTLLNNEVTPLDALSDYSLPETITDDTGAEIDVDFSDTEKQLAGVEAIIIDGWTQELELLDNLRSGFAKTATINSSLASD EKREVGEKFADYFEHSESLARLPNHRLLAMLRGRQENVLVLKVDGEDAPFVDKVINKFELENTKPQERHDFLITAANSLW KDKWRPHLEHRLLTEKRLAAEADAIDVFASNLQHLLMAAPAGRKVILGVDPGIRHGVKMAVIDAQGQVMQDGEGKPAIAT VYPFAPDNKMDEAKATIAQLLKDHQVELVAIGNGTASRETDAMIKELIEADETITAKAVVVNESGASVYSASELASDELA DLDVSIRGAVSIARRLQDPLSELVKVEPKAIGVGQYQHDVNQAQLSDSLDKVTQDCVNAVGVDVNTASPAILAHIAGLNR NVAQQIVNYRKEHGAFTNREQLKDVPRLGVKTFEQAAGFLRIRDGEEPLDATGVHPESYDLVKALLDKSGKSIADVLGND SLINTLSTDGIDAANDDNISIAAIKQELAKPAHDPRPEFKTAQFRDDVNSVSDLEEGMQLEGVVTNVTGFGCFVDVGVHQ DGLVHISEMANDFVEDPMNLVKPGDIVSVRVISIDAKRNRIGFSMKSEDAASAKRATSPQRSTDKNAENAATKPAKARKN SRAKPANKAARTANTRSDKPKPSKSAKPKAEEAKVGSLGALLQQAGLKK
Sequences:
>Translated_849_residues MPTTFLNFDTDMNQTDTTTANTPTSQSSSNLPADVIANIHNKLAKELGIKPAQVDAFVKLYDEGATVPFIARYRKEKTQG LDDSQLRALEKGLNYERDMASRRAKILELLQSQGNLTEALQSRIEQATSKLELEDIYLPYRPRRRSLAAKARAAGLDKVA KTLLNNEVTPLDALSDYSLPETITDDTGAEIDVDFSDTEKQLAGVEAIIIDGWTQELELLDNLRSGFAKTATINSSLASD EKREVGEKFADYFEHSESLARLPNHRLLAMLRGRQENVLVLKVDGEDAPFVDKVINKFELENTKPQERHDFLITAANSLW KDKWRPHLEHRLLTEKRLAAEADAIDVFASNLQHLLMAAPAGRKVILGVDPGIRHGVKMAVIDAQGQVMQDGEGKPAIAT VYPFAPDNKMDEAKATIAQLLKDHQVELVAIGNGTASRETDAMIKELIEADETITAKAVVVNESGASVYSASELASDELA DLDVSIRGAVSIARRLQDPLSELVKVEPKAIGVGQYQHDVNQAQLSDSLDKVTQDCVNAVGVDVNTASPAILAHIAGLNR NVAQQIVNYRKEHGAFTNREQLKDVPRLGVKTFEQAAGFLRIRDGEEPLDATGVHPESYDLVKALLDKSGKSIADVLGND SLINTLSTDGIDAANDDNISIAAIKQELAKPAHDPRPEFKTAQFRDDVNSVSDLEEGMQLEGVVTNVTGFGCFVDVGVHQ DGLVHISEMANDFVEDPMNLVKPGDIVSVRVISIDAKRNRIGFSMKSEDAASAKRATSPQRSTDKNAENAATKPAKARKN SRAKPANKAARTANTRSDKPKPSKSAKPKAEEAKVGSLGALLQQAGLKK >Mature_848_residues PTTFLNFDTDMNQTDTTTANTPTSQSSSNLPADVIANIHNKLAKELGIKPAQVDAFVKLYDEGATVPFIARYRKEKTQGL DDSQLRALEKGLNYERDMASRRAKILELLQSQGNLTEALQSRIEQATSKLELEDIYLPYRPRRRSLAAKARAAGLDKVAK TLLNNEVTPLDALSDYSLPETITDDTGAEIDVDFSDTEKQLAGVEAIIIDGWTQELELLDNLRSGFAKTATINSSLASDE KREVGEKFADYFEHSESLARLPNHRLLAMLRGRQENVLVLKVDGEDAPFVDKVINKFELENTKPQERHDFLITAANSLWK DKWRPHLEHRLLTEKRLAAEADAIDVFASNLQHLLMAAPAGRKVILGVDPGIRHGVKMAVIDAQGQVMQDGEGKPAIATV YPFAPDNKMDEAKATIAQLLKDHQVELVAIGNGTASRETDAMIKELIEADETITAKAVVVNESGASVYSASELASDELAD LDVSIRGAVSIARRLQDPLSELVKVEPKAIGVGQYQHDVNQAQLSDSLDKVTQDCVNAVGVDVNTASPAILAHIAGLNRN VAQQIVNYRKEHGAFTNREQLKDVPRLGVKTFEQAAGFLRIRDGEEPLDATGVHPESYDLVKALLDKSGKSIADVLGNDS LINTLSTDGIDAANDDNISIAAIKQELAKPAHDPRPEFKTAQFRDDVNSVSDLEEGMQLEGVVTNVTGFGCFVDVGVHQD GLVHISEMANDFVEDPMNLVKPGDIVSVRVISIDAKRNRIGFSMKSEDAASAKRATSPQRSTDKNAENAATKPAKARKNS RAKPANKAARTANTRSDKPKPSKSAKPKAEEAKVGSLGALLQQAGLKK
Specific function: Unknown
COG id: COG2183
COG function: function code K; Transcriptional accessory protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Homo sapiens, GI221136781, Length=800, Percent_Identity=32.5, Blast_Score=359, Evalue=6e-99, Organism=Homo sapiens, GI27597090, Length=350, Percent_Identity=24, Blast_Score=83, Evalue=1e-15, Organism=Escherichia coli, GI87082262, Length=778, Percent_Identity=46.9151670951157, Blast_Score=645, Evalue=0.0, Organism=Escherichia coli, GI1787140, Length=89, Percent_Identity=41.5730337078652, Blast_Score=69, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17511129, Length=736, Percent_Identity=27.7173913043478, Blast_Score=224, Evalue=2e-58, Organism=Drosophila melanogaster, GI62484314, Length=802, Percent_Identity=30.5486284289277, Blast_Score=358, Evalue=6e-99,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003583 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR005227 - InterPro: IPR006641 - InterPro: IPR022967 - InterPro: IPR018974 - InterPro: IPR023097 [H]
Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]
EC number: NA
Molecular weight: Translated: 92469; Mature: 92338
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTTFLNFDTDMNQTDTTTANTPTSQSSSNLPADVIANIHNKLAKELGIKPAQVDAFVKL CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH YDEGATVPFIARYRKEKTQGLDDSQLRALEKGLNYERDMASRRAKILELLQSQGNLTEAL HCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHH QSRIEQATSKLELEDIYLPYRPRRRSLAAKARAAGLDKVAKTLLNNEVTPLDALSDYSLP HHHHHHHHHHCCHHHEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHCCCCCC ETITDDTGAEIDVDFSDTEKQLAGVEAIIIDGWTQELELLDNLRSGFAKTATINSSLASD CCCCCCCCCEEEECCCHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCHHHHCCCHHHHCH EKREVGEKFADYFEHSESLARLPNHRLLAMLRGRQENVLVLKVDGEDAPFVDKVINKFEL HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHC ENTKPQERHDFLITAANSLWKDKWRPHLEHRLLTEKRLAAEADAIDVFASNLQHLLMAAP CCCCCHHHHCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AGRKVILGVDPGIRHGVKMAVIDAQGQVMQDGEGKPAIATVYPFAPDNKMDEAKATIAQL CCCEEEEECCCCCCCCCEEEEEECCCCEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHH LKDHQVELVAIGNGTASRETDAMIKELIEADETITAKAVVVNESGASVYSASELASDELA HHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHCCHHHH DLDVSIRGAVSIARRLQDPLSELVKVEPKAIGVGQYQHDVNQAQLSDSLDKVTQDCVNAV HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GVDVNTASPAILAHIAGLNRNVAQQIVNYRKEHGAFTNREQLKDVPRLGVKTFEQAAGFL CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCEE RIRDGEEPLDATGVHPESYDLVKALLDKSGKSIADVLGNDSLINTLSTDGIDAANDDNIS EEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCHHHHHHCCCCCCCCCCCCEE IAAIKQELAKPAHDPRPEFKTAQFRDDVNSVSDLEEGMQLEGVVTNVTGFGCFVDVGVHQ HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEECEEEECCCCCEEEEEECCCC DGLVHISEMANDFVEDPMNLVKPGDIVSVRVISIDAKRNRIGFSMKSEDAASAKRATSPQ CCCEEHHHHHHHHHHCCHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCC RSTDKNAENAATKPAKARKNSRAKPANKAARTANTRSDKPKPSKSAKPKAEEAKVGSLGA CCCCCCCHHHCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH LLQQAGLKK HHHHCCCCC >Mature Secondary Structure PTTFLNFDTDMNQTDTTTANTPTSQSSSNLPADVIANIHNKLAKELGIKPAQVDAFVKL CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH YDEGATVPFIARYRKEKTQGLDDSQLRALEKGLNYERDMASRRAKILELLQSQGNLTEAL HCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHH QSRIEQATSKLELEDIYLPYRPRRRSLAAKARAAGLDKVAKTLLNNEVTPLDALSDYSLP HHHHHHHHHHCCHHHEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHCCCCCC ETITDDTGAEIDVDFSDTEKQLAGVEAIIIDGWTQELELLDNLRSGFAKTATINSSLASD CCCCCCCCCEEEECCCHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCHHHHCCCHHHHCH EKREVGEKFADYFEHSESLARLPNHRLLAMLRGRQENVLVLKVDGEDAPFVDKVINKFEL HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHC ENTKPQERHDFLITAANSLWKDKWRPHLEHRLLTEKRLAAEADAIDVFASNLQHLLMAAP CCCCCHHHHCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AGRKVILGVDPGIRHGVKMAVIDAQGQVMQDGEGKPAIATVYPFAPDNKMDEAKATIAQL CCCEEEEECCCCCCCCCEEEEEECCCCEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHH LKDHQVELVAIGNGTASRETDAMIKELIEADETITAKAVVVNESGASVYSASELASDELA HHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHCCHHHH DLDVSIRGAVSIARRLQDPLSELVKVEPKAIGVGQYQHDVNQAQLSDSLDKVTQDCVNAV HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GVDVNTASPAILAHIAGLNRNVAQQIVNYRKEHGAFTNREQLKDVPRLGVKTFEQAAGFL CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCEE RIRDGEEPLDATGVHPESYDLVKALLDKSGKSIADVLGNDSLINTLSTDGIDAANDDNIS EEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCHHHHHHCCCCCCCCCCCCEE IAAIKQELAKPAHDPRPEFKTAQFRDDVNSVSDLEEGMQLEGVVTNVTGFGCFVDVGVHQ HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEECEEEECCCCCEEEEEECCCC DGLVHISEMANDFVEDPMNLVKPGDIVSVRVISIDAKRNRIGFSMKSEDAASAKRATSPQ CCCEEHHHHHHHHHHCCHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCC RSTDKNAENAATKPAKARKNSRAKPANKAARTANTRSDKPKPSKSAKPKAEEAKVGSLGA CCCCCCCHHHCCCCHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH LLQQAGLKK HHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10761919 [H]