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The map label for this gene is psd [H]

Identifier: 148653892

GI number: 148653892

Start: 2614877

End: 2615788

Strand: Direct

Name: psd [H]

Synonym: PsycPRwf_2095

Alternate gene names: 148653892

Gene position: 2614877-2615788 (Clockwise)

Preceding gene: 148653888

Following gene: 148653898

Centisome position: 87.78

GC content: 49.12

Gene sequence:

>912_bases
ATGATCTCTTTTATGAAAAACTTAATGAAAGCCTCTTTAAAAAAACAAGCCGAGCAGCTGCTCACTCGTGATGGCTTATT
TACTGCAGCTCAGCACTTAGTGCCGCAGCAAAAACTCAGTGAAACGGCCGGACGTCTGGCTGCCAGCCAAAACCCTCTGG
TCAAAAAAGCCTTTGTGCATACTTTTGCCAAAGCCTATGGCATTAGCTTAGAGGAATACGCGCGCAAGAACTTAGGCGAT
TTTAAAAGCTTCAATGACTTTTTTACCCGAGAGCTTGCGCAGGACGCCCGCCCCATTGATGACACCAAAGACGGTATTGT
CTCTCCAGCAGACGGTATGATTTCACAGATTGGCCATATTCAGCAAGGCCAAATCTTGCAGGCTAAAGGTCGTGATTATT
CGGTGAGCCATCTGTTAGCAGACACCGATAATAAGCACAGCAGCTACTATGAGGGCGGCAGCTTCGCCACGGTATACTTA
GCACCTAGCAACTACCATAGAGTGCATATGCCGTTCGATGGCACCTTAGTTGAGACACGCTATGTACCTGGCAGCTTGTT
CTCAGTAAACAATGTCACAGCCGCCAATGTTCCTGATTTATTCGCCCGCAATGAGCGTTTGGTGTGTGTGTTTGATACTG
AGTTTGGCCGTGCTGTGGTGGTGCTGGTCGGCGCTATGATTGTGGCGGGTATAGAGACAGTCGCCACGGGTAAAATTGAT
CGCAGCGACCGTATCCAAACTTTAGAGCACACGCTTAGCTTAAAAAAAGGCGATGAGCTGGGCCGCTTCTATTTGGGCTC
AACCGCTATTGTGGTCATGCCAAAGTCTGCAGGCGTCAACTGGGCACAAGACATGCAGCATGGTGCTGTAGTGCAGATGG
GTCAGCTACTGGGTGTGGCTGACAAAGCCTAA

Upstream 100 bases:

>100_bases
TTGATTATGCTAAACTAGGTGCTCCTTAACTTTTAGTTTTTATCACTGGCAAGTTTATGTCATCTAAACCGGTGATGATC
CCCCATTTTTACAGCTTACG

Downstream 100 bases:

>100_bases
CCACCTACGATGAGTCTATGCTTGACAATGTAAAGGTGCAGCGAATGCACCTTTATTTATCGCATTTTTTATTGATAACT
AAGCGTCTAATAACCAGCCC

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MISFMKNLMKASLKKQAEQLLTRDGLFTAAQHLVPQQKLSETAGRLAASQNPLVKKAFVHTFAKAYGISLEEYARKNLGD
FKSFNDFFTRELAQDARPIDDTKDGIVSPADGMISQIGHIQQGQILQAKGRDYSVSHLLADTDNKHSSYYEGGSFATVYL
APSNYHRVHMPFDGTLVETRYVPGSLFSVNNVTAANVPDLFARNERLVCVFDTEFGRAVVVLVGAMIVAGIETVATGKID
RSDRIQTLEHTLSLKKGDELGRFYLGSTAIVVMPKSAGVNWAQDMQHGAVVQMGQLLGVADKA

Sequences:

>Translated_303_residues
MISFMKNLMKASLKKQAEQLLTRDGLFTAAQHLVPQQKLSETAGRLAASQNPLVKKAFVHTFAKAYGISLEEYARKNLGD
FKSFNDFFTRELAQDARPIDDTKDGIVSPADGMISQIGHIQQGQILQAKGRDYSVSHLLADTDNKHSSYYEGGSFATVYL
APSNYHRVHMPFDGTLVETRYVPGSLFSVNNVTAANVPDLFARNERLVCVFDTEFGRAVVVLVGAMIVAGIETVATGKID
RSDRIQTLEHTLSLKKGDELGRFYLGSTAIVVMPKSAGVNWAQDMQHGAVVQMGQLLGVADKA
>Mature_303_residues
MISFMKNLMKASLKKQAEQLLTRDGLFTAAQHLVPQQKLSETAGRLAASQNPLVKKAFVHTFAKAYGISLEEYARKNLGD
FKSFNDFFTRELAQDARPIDDTKDGIVSPADGMISQIGHIQQGQILQAKGRDYSVSHLLADTDNKHSSYYEGGSFATVYL
APSNYHRVHMPFDGTLVETRYVPGSLFSVNNVTAANVPDLFARNERLVCVFDTEFGRAVVVLVGAMIVAGIETVATGKID
RSDRIQTLEHTLSLKKGDELGRFYLGSTAIVVMPKSAGVNWAQDMQHGAVVQMGQLLGVADKA

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=301, Percent_Identity=27.5747508305648, Blast_Score=121, Evalue=9e-28,
Organism=Escherichia coli, GI1790604, Length=279, Percent_Identity=42.6523297491039, Blast_Score=227, Evalue=7e-61,
Organism=Caenorhabditis elegans, GI71980843, Length=277, Percent_Identity=29.9638989169675, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71980840, Length=277, Percent_Identity=29.9638989169675, Blast_Score=109, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6321609, Length=219, Percent_Identity=31.0502283105023, Blast_Score=104, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6324160, Length=165, Percent_Identity=35.1515151515151, Blast_Score=83, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24649526, Length=302, Percent_Identity=28.1456953642384, Blast_Score=98, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24649528, Length=302, Percent_Identity=28.1456953642384, Blast_Score=98, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24649524, Length=302, Percent_Identity=28.1456953642384, Blast_Score=98, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 33186; Mature: 33186

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISFMKNLMKASLKKQAEQLLTRDGLFTAAQHLVPQQKLSETAGRLAASQNPLVKKAFVH
CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHH
TFAKAYGISLEEYARKNLGDFKSFNDFFTRELAQDARPIDDTKDGIVSPADGMISQIGHI
HHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCC
QQGQILQAKGRDYSVSHLLADTDNKHSSYYEGGSFATVYLAPSNYHRVHMPFDGTLVETR
CCCCEEEECCCCCCHHHHEECCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEE
YVPGSLFSVNNVTAANVPDLFARNERLVCVFDTEFGRAVVVLVGAMIVAGIETVATGKID
ECCCCEEEECCCCCCCCCHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC
RSDRIQTLEHTLSLKKGDELGRFYLGSTAIVVMPKSAGVNWAQDMQHGAVVQMGQLLGVA
CHHHHHHHHHHHHHCCCCHHCEEEECCEEEEEEECCCCCCHHHHHHCCHHHHHHHHHHCC
DKA
CCC
>Mature Secondary Structure
MISFMKNLMKASLKKQAEQLLTRDGLFTAAQHLVPQQKLSETAGRLAASQNPLVKKAFVH
CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHH
TFAKAYGISLEEYARKNLGDFKSFNDFFTRELAQDARPIDDTKDGIVSPADGMISQIGHI
HHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCC
QQGQILQAKGRDYSVSHLLADTDNKHSSYYEGGSFATVYLAPSNYHRVHMPFDGTLVETR
CCCCEEEECCCCCCHHHHEECCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEE
YVPGSLFSVNNVTAANVPDLFARNERLVCVFDTEFGRAVVVLVGAMIVAGIETVATGKID
ECCCCEEEECCCCCCCCCHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC
RSDRIQTLEHTLSLKKGDELGRFYLGSTAIVVMPKSAGVNWAQDMQHGAVVQMGQLLGVA
CHHHHHHHHHHHHHCCCCHHCEEEECCEEEEEEECCCCCCHHHHHHCCHHHHHHHHHHCC
DKA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA