Click here to switch to the map view.

The map label for this gene is yagA [C]

Identifier: 148653741

GI number: 148653741

Start: 2422812

End: 2423540

Strand: Direct

Name: yagA [C]

Synonym: PsycPRwf_1944

Alternate gene names: 148653741

Gene position: 2422812-2423540 (Clockwise)

Preceding gene: 148653740

Following gene: 148653747

Centisome position: 81.33

GC content: 41.84

Gene sequence:

>729_bases
ATGAGTCGAACCGCTTACTACTATAAGCCTAAGCTATCTGATGATAGTGAGATTATTGATGTCTTAAACAAGCTTACTGA
CAAGCACAATCGTTGGGGTTTCCCAAAGTGTTTTAAGCGTATACGCAAGCTTGGCTACTCATGGAATCACAAGCGAGTAC
ACCGTGTTTATACCACGTTAAACTTAAACCTACGCCGTAAGTCTAAAAGACGGCTACCAACACGTAATCCCCAGCCGCTA
AGTGTGCCAAACGCATTGGGGCATACTTGGTCTATGGACTTTATGAGCGATAAGCTGCACAACAATATTCGCTTTCGAAC
CTTTAATGTGATTGATGATTACAACCGTGAAGTATTAGGCATTGATATTGGCACCAGTATGCCTTCACTTAGAGTGATTC
GCTACCTTGATCAACTAGCTGAGTGGCATGGCTATCCTAAGCAAATTCGTGTGGATAATGGTAGTGAGTTTACCTCTAAA
GTGTTTACTGATTGGGCATCGGCTCACGGTATCTATATTGACTATATCGAGCCTGGCTGTCCTTATCAGAATGCTTATAT
TGAACGGTTTAATCGCAGTTATCGTAATGAGGTTTTAGACTGCTACCTTTTCAACAATTTAAACGAGGTTAGTAAGCTGA
CTGAGGATTGGATCACGGTTTATAACACCGAAAGACCCCATGATTCACTTAATGATATGACACCTGCTGAGTACAGACAG
GTGGCTTAA

Upstream 100 bases:

>100_bases
TAAAAAAGCTATAGCGCCTGCCCTTGAGCGCAAAGTCTGGGCACAAGAGTTACAGGCGCAGTATGGTGTTAGTATTGCAT
TGAGCTGTCAGGTGGTCTGT

Downstream 100 bases:

>100_bases
TTATTCTACGATGATGTTGTGTTAAGAATGGGGTATTTACACTTCCTGTTGAGCTTTTTGGGCTTCTGCTCTTGCATCAT
CTAAATCTTTTAAAGCCTGC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSRTAYYYKPKLSDDSEIIDVLNKLTDKHNRWGFPKCFKRIRKLGYSWNHKRVHRVYTTLNLNLRRKSKRRLPTRNPQPL
SVPNALGHTWSMDFMSDKLHNNIRFRTFNVIDDYNREVLGIDIGTSMPSLRVIRYLDQLAEWHGYPKQIRVDNGSEFTSK
VFTDWASAHGIYIDYIEPGCPYQNAYIERFNRSYRNEVLDCYLFNNLNEVSKLTEDWITVYNTERPHDSLNDMTPAEYRQ
VA

Sequences:

>Translated_242_residues
MSRTAYYYKPKLSDDSEIIDVLNKLTDKHNRWGFPKCFKRIRKLGYSWNHKRVHRVYTTLNLNLRRKSKRRLPTRNPQPL
SVPNALGHTWSMDFMSDKLHNNIRFRTFNVIDDYNREVLGIDIGTSMPSLRVIRYLDQLAEWHGYPKQIRVDNGSEFTSK
VFTDWASAHGIYIDYIEPGCPYQNAYIERFNRSYRNEVLDCYLFNNLNEVSKLTEDWITVYNTERPHDSLNDMTPAEYRQ
VA
>Mature_241_residues
SRTAYYYKPKLSDDSEIIDVLNKLTDKHNRWGFPKCFKRIRKLGYSWNHKRVHRVYTTLNLNLRRKSKRRLPTRNPQPLS
VPNALGHTWSMDFMSDKLHNNIRFRTFNVIDDYNREVLGIDIGTSMPSLRVIRYLDQLAEWHGYPKQIRVDNGSEFTSKV
FTDWASAHGIYIDYIEPGCPYQNAYIERFNRSYRNEVLDCYLFNNLNEVSKLTEDWITVYNTERPHDSLNDMTPAEYRQV
A

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=246, Percent_Identity=28.8617886178862, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789981, Length=253, Percent_Identity=25.296442687747, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 28856; Mature: 28725

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRTAYYYKPKLSDDSEIIDVLNKLTDKHNRWGFPKCFKRIRKLGYSWNHKRVHRVYTTL
CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHE
NLNLRRKSKRRLPTRNPQPLSVPNALGHTWSMDFMSDKLHNNIRFRTFNVIDDYNREVLG
EEEEHHHHHHCCCCCCCCCCCCCCHHCCCEEHHHHHHHHHCCCEEEEEECCCCCCCEEEE
IDIGTSMPSLRVIRYLDQLAEWHGYPKQIRVDNGSEFTSKVFTDWASAHGIYIDYIEPGC
EECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
PYQNAYIERFNRSYRNEVLDCYLFNNLNEVSKLTEDWITVYNTERPHDSLNDMTPAEYRQ
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHC
VA
CC
>Mature Secondary Structure 
SRTAYYYKPKLSDDSEIIDVLNKLTDKHNRWGFPKCFKRIRKLGYSWNHKRVHRVYTTL
CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHE
NLNLRRKSKRRLPTRNPQPLSVPNALGHTWSMDFMSDKLHNNIRFRTFNVIDDYNREVLG
EEEEHHHHHHCCCCCCCCCCCCCCHHCCCEEHHHHHHHHHCCCEEEEEECCCCCCCEEEE
IDIGTSMPSLRVIRYLDQLAEWHGYPKQIRVDNGSEFTSKVFTDWASAHGIYIDYIEPGC
EECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
PYQNAYIERFNRSYRNEVLDCYLFNNLNEVSKLTEDWITVYNTERPHDSLNDMTPAEYRQ
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHC
VA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]