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The map label for this gene is sotB [H]

Identifier: 148653299

GI number: 148653299

Start: 1829561

End: 1830691

Strand: Direct

Name: sotB [H]

Synonym: PsycPRwf_1499

Alternate gene names: 148653299

Gene position: 1829561-1830691 (Clockwise)

Preceding gene: 148653298

Following gene: 148653300

Centisome position: 61.42

GC content: 45.89

Gene sequence:

>1131_bases
ATGGGCATCAGTGCTTTTGTTATGAATACCACTGAATTCGTGCCTGTGGCTTTATTAAGCGATATTGCCAAAGACTTCTC
CATCACCACCGCCGAAACCGGCTGGATGCTCACCTTATATGCCTGGATTGTGGCGGCCATGTCGCTGCCATTAATGCTAC
TCACCAGTAAGCTTGAACGCAAAAAGCTATTACTGGGTATTTTTGCATTATTTATCGTCAGTCATGCGCTATCCGTATTT
GCTTGGAGTTTTAATGTTCTATTAATTAGCCGAGTGGGTATCGCTTTTTCTCATGCTATATTCTGGTCAATCACCGCAGC
GATTGCCATTCGAGTGGCGCCTGAAGGCAAAAAAGCCTTCGCCTTAAGCGTGGTGGCAACCGGCACTTCCTTGGCTATGG
TACTGGGTGTTCCTTTGGGCCGAGTGATCGGACAGTGGTATGGCTGGCGTACTACTTTTGGCGGCATAGGTATTGTGGCA
CTGGTGGTTTGCTTATTACAAGCTAAGCTACTACCGTCATTGCCTAGCATGTTTAAAGGCTCTTTTAGAAAAGTGCCAGA
ACTGCTAAAAAACCCACTTTTGGTCTGTCTGTACTTGCTTATCTTTACCGTATTTACCGCCCACTATACCGCCTATTCAT
ATATCGAACCTTTTATGCGTGAGATTGGCTCAATTAGTGAGAACTTGGCAACCTTTGTATTATTATTATTCGGGGGCGCA
GGCATCATCGGTAGTATCTTATTTAGCCGCTGGGGAGACAGACACAGCACCTTATTGATGCTGGGCTCTATCATAGTCAT
GCTAGTGTCTATGCTTACCTTGTTATTGGCGGTCAACTCTATCTGGGCGCTTAGCCTTAATGCCTTGTTATGGGGCACGG
CATTAATGCTGTTAATCATCTCTATGCAGGCCAAAGTACTTATGGTGGATCTGCATGCCCAAGACATGCTGATGTCTATG
TTCTCAGGCATTATTAACTTAGGTATTGGTACAGGCGCCTTATTTGGCGGTTATGCAGTGACCCACATCTCGTTATCCAG
TGTGGGCTATGTTGGCGCGGTGATTAGTCTAATCGCCTTATTGCTGGTAGCATTTATGATTAAGCGCTTCCCCGCTTTAC
GGGCATCTTAG

Upstream 100 bases:

>100_bases
AATTATTAGTAATTAGCCCCTTTTTGTATTTGATTTTATGACACATACCTCTCAGGCAGATACCCTGTCTCGCCGAACTC
AATATATTCAAGTCCTATTA

Downstream 100 bases:

>100_bases
TTATTTTTAAGTCAGTGAAACCTGTTTTAATGACGGCTTAGTTAATGACAAAAAAATTTTAGCTTGTCTGTGTAAAACTT
GTTGTAATGAAAATCATTCA

Product: sugar efflux transporter

Products: arabinose [Periplasm]; Proton [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MGISAFVMNTTEFVPVALLSDIAKDFSITTAETGWMLTLYAWIVAAMSLPLMLLTSKLERKKLLLGIFALFIVSHALSVF
AWSFNVLLISRVGIAFSHAIFWSITAAIAIRVAPEGKKAFALSVVATGTSLAMVLGVPLGRVIGQWYGWRTTFGGIGIVA
LVVCLLQAKLLPSLPSMFKGSFRKVPELLKNPLLVCLYLLIFTVFTAHYTAYSYIEPFMREIGSISENLATFVLLLFGGA
GIIGSILFSRWGDRHSTLLMLGSIIVMLVSMLTLLLAVNSIWALSLNALLWGTALMLLIISMQAKVLMVDLHAQDMLMSM
FSGIINLGIGTGALFGGYAVTHISLSSVGYVGAVISLIALLLVAFMIKRFPALRAS

Sequences:

>Translated_376_residues
MGISAFVMNTTEFVPVALLSDIAKDFSITTAETGWMLTLYAWIVAAMSLPLMLLTSKLERKKLLLGIFALFIVSHALSVF
AWSFNVLLISRVGIAFSHAIFWSITAAIAIRVAPEGKKAFALSVVATGTSLAMVLGVPLGRVIGQWYGWRTTFGGIGIVA
LVVCLLQAKLLPSLPSMFKGSFRKVPELLKNPLLVCLYLLIFTVFTAHYTAYSYIEPFMREIGSISENLATFVLLLFGGA
GIIGSILFSRWGDRHSTLLMLGSIIVMLVSMLTLLLAVNSIWALSLNALLWGTALMLLIISMQAKVLMVDLHAQDMLMSM
FSGIINLGIGTGALFGGYAVTHISLSSVGYVGAVISLIALLLVAFMIKRFPALRAS
>Mature_375_residues
GISAFVMNTTEFVPVALLSDIAKDFSITTAETGWMLTLYAWIVAAMSLPLMLLTSKLERKKLLLGIFALFIVSHALSVFA
WSFNVLLISRVGIAFSHAIFWSITAAIAIRVAPEGKKAFALSVVATGTSLAMVLGVPLGRVIGQWYGWRTTFGGIGIVAL
VVCLLQAKLLPSLPSMFKGSFRKVPELLKNPLLVCLYLLIFTVFTAHYTAYSYIEPFMREIGSISENLATFVLLLFGGAG
IIGSILFSRWGDRHSTLLMLGSIIVMLVSMLTLLLAVNSIWALSLNALLWGTALMLLIISMQAKVLMVDLHAQDMLMSMF
SGIINLGIGTGALFGGYAVTHISLSSVGYVGAVISLIALLLVAFMIKRFPALRAS

Specific function: Involved in the efflux of sugars. The physiological role may be the reduction of the intracellular concentration of toxic sugars or sugar metabolites [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. SotB (TC 2.A.1.2) family [H]

Homologues:

Organism=Escherichia coli, GI1787808, Length=371, Percent_Identity=54.177897574124, Blast_Score=351, Evalue=4e-98,
Organism=Escherichia coli, GI145693198, Length=358, Percent_Identity=28.7709497206704, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787947, Length=338, Percent_Identity=27.810650887574, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1786595, Length=258, Percent_Identity=25.968992248062, Blast_Score=98, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40653; Mature: 40522

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGISAFVMNTTEFVPVALLSDIAKDFSITTAETGWMLTLYAWIVAAMSLPLMLLTSKLER
CCCCEEEECCHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KKLLLGIFALFIVSHALSVFAWSFNVLLISRVGIAFSHAIFWSITAAIAIRVAPEGKKAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCE
ALSVVATGTSLAMVLGVPLGRVIGQWYGWRTTFGGIGIVALVVCLLQAKLLPSLPSMFKG
EEEEECCCHHHHHHHHCCHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHHCC
SFRKVPELLKNPLLVCLYLLIFTVFTAHYTAYSYIEPFMREIGSISENLATFVLLLFGGA
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
GIIGSILFSRWGDRHSTLLMLGSIIVMLVSMLTLLLAVNSIWALSLNALLWGTALMLLII
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SMQAKVLMVDLHAQDMLMSMFSGIINLGIGTGALFGGYAVTHISLSSVGYVGAVISLIAL
HHHHHEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLVAFMIKRFPALRAS
HHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GISAFVMNTTEFVPVALLSDIAKDFSITTAETGWMLTLYAWIVAAMSLPLMLLTSKLER
CCCEEEECCHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KKLLLGIFALFIVSHALSVFAWSFNVLLISRVGIAFSHAIFWSITAAIAIRVAPEGKKAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCE
ALSVVATGTSLAMVLGVPLGRVIGQWYGWRTTFGGIGIVALVVCLLQAKLLPSLPSMFKG
EEEEECCCHHHHHHHHCCHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHCCCHHHHCC
SFRKVPELLKNPLLVCLYLLIFTVFTAHYTAYSYIEPFMREIGSISENLATFVLLLFGGA
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
GIIGSILFSRWGDRHSTLLMLGSIIVMLVSMLTLLLAVNSIWALSLNALLWGTALMLLII
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SMQAKVLMVDLHAQDMLMSMFSGIINLGIGTGALFGGYAVTHISLSSVGYVGAVISLIAL
HHHHHEEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLVAFMIKRFPALRAS
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: arabinose [Cytoplasm]; Proton [Periplasm] [C]

Specific reaction: arabinose [Cytoplasm] + Proton [Periplasm] = arabinose [Periplasm] + Proton [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA