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The map label for this gene is ybhD [H]

Identifier: 148653046

GI number: 148653046

Start: 1529990

End: 1530871

Strand: Direct

Name: ybhD [H]

Synonym: PsycPRwf_1242

Alternate gene names: 148653046

Gene position: 1529990-1530871 (Clockwise)

Preceding gene: 148653039

Following gene: 148653047

Centisome position: 51.36

GC content: 43.76

Gene sequence:

>882_bases
ATGAATATCAAGTTACAACAGCTGCGTCATTTTTTGTATGTGGTGGAAGAAGGTGGCTTTCGGGCAGCCGCTTCTCGTGC
CAATCGCTCTCAAGCTACGTTGTCATCTTCAATAAAAGCATTAGAAAATGAATTGGGTCGTGCGTTGTTTGAGCCTGGTA
ATAACTCGATCTTAACGCCTTTTGGCGAAGAGTGTGCACCCAAAATCGATCAGTTTATGCAGCTTTATCATCGCCTTGAA
ACCGACCTACAGTCTACTGCTTTAGGAAAATACGGTAAGATAAGAATAGCCACTGTTCCCTCTATAGCCACCAAACTGCT
GCCTGACGTCTTAGCAGAATACTCCAGACGTTATCCTGATGTAGAGATAAGCTTAGTTGATGACAACTCGGTAGGTGTTT
GCAACCGTTTGCTTGCTGGCGAGGTCGATATTGCGCTAGGTAATTTAGACACCACCCATGAGCAAGAGGTGACTTTTATG
CCGTTACTTGCTGACCCTATTGGCGTGGTCTGCACCAAAAACCATCGACTTGCTCAGTTTAAAGAGGGCGTCGTGTGGCA
AGAGCTGTTAGGCGAACCTTTTATTTATAACGGTACCTGTCAGTTACTCAGCCATACCCCTGCTTATGAGATAAATATCA
AGCCTAGATATGAAGTGGGCAATATTACCTCCTTATTCTCATTATTAAGAAATGAGCTCGGTGTGACGACCTTACCCAAG
CTTGCCTTTCCAGAGTACGATAACCATTTGGTATGGATACCGCTTATTGACCCTATTGTAAAACGTCAGATAGGCATGTT
TAGCATTGCTGGCAGAACATTACCACCGCAAGTACAGCTTTTTACTCAGCTTTGCTCCAGTTATATAAAAGGCTTAAATT
GA

Upstream 100 bases:

>100_bases
AATTCAAGTGATAAATCTAACAAATAATATCTTAGATATGATAGATTTAATCTATCGCTAAAAATAGCAATCAAATATAA
GCAACAAGGAGGTTGTCGTT

Downstream 100 bases:

>100_bases
GTGTAGACTCATTGAGTTAATGGCCCAGCTTACTTATAAAGACAGCACTTATAAGGAAAGCCCCATAGATTTTCAGCCCA
GTTTTCATTAAACTTAACCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MNIKLQQLRHFLYVVEEGGFRAAASRANRSQATLSSSIKALENELGRALFEPGNNSILTPFGEECAPKIDQFMQLYHRLE
TDLQSTALGKYGKIRIATVPSIATKLLPDVLAEYSRRYPDVEISLVDDNSVGVCNRLLAGEVDIALGNLDTTHEQEVTFM
PLLADPIGVVCTKNHRLAQFKEGVVWQELLGEPFIYNGTCQLLSHTPAYEINIKPRYEVGNITSLFSLLRNELGVTTLPK
LAFPEYDNHLVWIPLIDPIVKRQIGMFSIAGRTLPPQVQLFTQLCSSYIKGLN

Sequences:

>Translated_293_residues
MNIKLQQLRHFLYVVEEGGFRAAASRANRSQATLSSSIKALENELGRALFEPGNNSILTPFGEECAPKIDQFMQLYHRLE
TDLQSTALGKYGKIRIATVPSIATKLLPDVLAEYSRRYPDVEISLVDDNSVGVCNRLLAGEVDIALGNLDTTHEQEVTFM
PLLADPIGVVCTKNHRLAQFKEGVVWQELLGEPFIYNGTCQLLSHTPAYEINIKPRYEVGNITSLFSLLRNELGVTTLPK
LAFPEYDNHLVWIPLIDPIVKRQIGMFSIAGRTLPPQVQLFTQLCSSYIKGLN
>Mature_293_residues
MNIKLQQLRHFLYVVEEGGFRAAASRANRSQATLSSSIKALENELGRALFEPGNNSILTPFGEECAPKIDQFMQLYHRLE
TDLQSTALGKYGKIRIATVPSIATKLLPDVLAEYSRRYPDVEISLVDDNSVGVCNRLLAGEVDIALGNLDTTHEQEVTFM
PLLADPIGVVCTKNHRLAQFKEGVVWQELLGEPFIYNGTCQLLSHTPAYEINIKPRYEVGNITSLFSLLRNELGVTTLPK
LAFPEYDNHLVWIPLIDPIVKRQIGMFSIAGRTLPPQVQLFTQLCSSYIKGLN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=24.7422680412371, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1788748, Length=280, Percent_Identity=28.2142857142857, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787879, Length=267, Percent_Identity=28.4644194756554, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1787601, Length=176, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI157672245, Length=263, Percent_Identity=25.4752851711027, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790399, Length=302, Percent_Identity=24.1721854304636, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788481, Length=254, Percent_Identity=27.9527559055118, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788887, Length=245, Percent_Identity=27.7551020408163, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32731; Mature: 32731

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKLQQLRHFLYVVEEGGFRAAASRANRSQATLSSSIKALENELGRALFEPGNNSILTP
CCCCHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECC
FGEECAPKIDQFMQLYHRLETDLQSTALGKYGKIRIATVPSIATKLLPDVLAEYSRRYPD
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCC
VEISLVDDNSVGVCNRLLAGEVDIALGNLDTTHEQEVTFMPLLADPIGVVCTKNHRLAQF
EEEEEECCCCCHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCCCCEEEECCCCHHHH
KEGVVWQELLGEPFIYNGTCQLLSHTPAYEINIKPRYEVGNITSLFSLLRNELGVTTLPK
HCCHHHHHHCCCCEEECCCHHEEECCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCC
LAFPEYDNHLVWIPLIDPIVKRQIGMFSIAGRTLPPQVQLFTQLCSSYIKGLN
CCCCCCCCCEEEEEHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNIKLQQLRHFLYVVEEGGFRAAASRANRSQATLSSSIKALENELGRALFEPGNNSILTP
CCCCHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECC
FGEECAPKIDQFMQLYHRLETDLQSTALGKYGKIRIATVPSIATKLLPDVLAEYSRRYPD
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCCC
VEISLVDDNSVGVCNRLLAGEVDIALGNLDTTHEQEVTFMPLLADPIGVVCTKNHRLAQF
EEEEEECCCCCHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCCCCEEEECCCCHHHH
KEGVVWQELLGEPFIYNGTCQLLSHTPAYEINIKPRYEVGNITSLFSLLRNELGVTTLPK
HCCHHHHHHCCCCEEECCCHHEEECCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCC
LAFPEYDNHLVWIPLIDPIVKRQIGMFSIAGRTLPPQVQLFTQLCSSYIKGLN
CCCCCCCCCEEEEEHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]