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The map label for this gene is intA [H]

Identifier: 148653022

GI number: 148653022

Start: 1495159

End: 1496367

Strand: Direct

Name: intA [H]

Synonym: PsycPRwf_1216

Alternate gene names: 148653022

Gene position: 1495159-1496367 (Clockwise)

Preceding gene: 148653016

Following gene: 148653026

Centisome position: 50.19

GC content: 43.67

Gene sequence:

>1209_bases
ATGGCTAAAATTACTGCACCCCTTACAAATACTCAGGTTAAGCAGGCTAAAAATACCGATAAGCCTTATAAATTGTCAGA
CGGTGGCGGACTTTATCTATATATATCAAGTACCGGCACAAAATCTTGGCGCTTTGATTACACTAGGCCATTTACTAAAA
AACGGGCCACGCTTACATTTGGTCAGTACCCTGAAATCTCGCTTGCCGGCGCGCGAACCATACGCGCCGAGTACAGGGCA
TTACTAGCAATTGACATTGATCCAGCTGACAAAATACGTGATGAGGCACGCCAACAACGCTTAAAACAAAATAACACTTT
TGAGATTGTGGCTGCTGAGTATATCGAGCGCCAAACTCATCTATCGCAAGATACAATCGACCACAAAGCCAGATATGCTA
TGTATTTGAGCCAACACTTAGGCCGCATGCCTATTTCAGATATCAAACCAATTGACGTACTTGATGCATGTCGTAAAGTT
GAAAAGCAAGGGTATCTTGAGACAGCAAAGAAAATGCGCTCGCTAGCAGGTCAGGTATTTAGATACGCAGTGCAGACGGC
AAGATGTGAGCGTGATGTTACTCAAGACTTAAAAGGAGCTCTTAAGCCACCAGAAGTAAAGCATTATCCCGCAATTACCG
ACCCGGAAGAATTTGCTATATTGCTACGTGCGATTGACGACTATGACGGGATGTTTGAGACGCGTATCGCTATCAAAATA
ATCCCTCATCTTTTTGTTAGAAGTGGTGAGTTGCGCAATGCGCTATGGGAAGATTTCGACTTTGATGCCCGAACCTGGAC
ATTCACACCGCGTAAAACTAAGCGCAAAACCGGCGTATCTCTGATCGTACCTCTATCTGACCAGGTTTATGATCTATTCA
AACAATTAGAGCCGCATAAGCGCAGCGATTTTGTATTTCCATCGCTACATTCAACAATACGGCCAATGAGCGAAAATACA
TTAGGTCAGGCTCTAAAGCGCCTGGGATTTAGTGGTGAACAGCATACGGTACACGGTTTTAGAGCATCAGCTAGAACAAT
GCTGGTTGAGCGACTCAAATACGATGAATCGTTAGTAGAAATGCAGCTTGGCCATAATGTGCGAGATATGCACGGTAGGG
CCTACAATAGGACCGTTTTTTTAGATGAGAGACGAGAAATGATGCAAACCTGGTCAAATTATCTGGATGAACTTAAAAGC
TCAGTATAA

Upstream 100 bases:

>100_bases
AATAAACTTTATCGTACCATAAAGACCCCTTGCATACCGTCAATTTTACGGTAATATAAGCGGTATTACCGAAAATACCG
TTAAAGGATACCGTAAAATA

Downstream 100 bases:

>100_bases
CTTATTAGATGTTAGAACCAGAAAAAAAGCCTCAAAAACTGACTTTTTCGCTCCCTAAAGGAAGAGTACATCTACTACTA
AATAATTAAACTTATCCTAA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MAKITAPLTNTQVKQAKNTDKPYKLSDGGGLYLYISSTGTKSWRFDYTRPFTKKRATLTFGQYPEISLAGARTIRAEYRA
LLAIDIDPADKIRDEARQQRLKQNNTFEIVAAEYIERQTHLSQDTIDHKARYAMYLSQHLGRMPISDIKPIDVLDACRKV
EKQGYLETAKKMRSLAGQVFRYAVQTARCERDVTQDLKGALKPPEVKHYPAITDPEEFAILLRAIDDYDGMFETRIAIKI
IPHLFVRSGELRNALWEDFDFDARTWTFTPRKTKRKTGVSLIVPLSDQVYDLFKQLEPHKRSDFVFPSLHSTIRPMSENT
LGQALKRLGFSGEQHTVHGFRASARTMLVERLKYDESLVEMQLGHNVRDMHGRAYNRTVFLDERREMMQTWSNYLDELKS
SV

Sequences:

>Translated_402_residues
MAKITAPLTNTQVKQAKNTDKPYKLSDGGGLYLYISSTGTKSWRFDYTRPFTKKRATLTFGQYPEISLAGARTIRAEYRA
LLAIDIDPADKIRDEARQQRLKQNNTFEIVAAEYIERQTHLSQDTIDHKARYAMYLSQHLGRMPISDIKPIDVLDACRKV
EKQGYLETAKKMRSLAGQVFRYAVQTARCERDVTQDLKGALKPPEVKHYPAITDPEEFAILLRAIDDYDGMFETRIAIKI
IPHLFVRSGELRNALWEDFDFDARTWTFTPRKTKRKTGVSLIVPLSDQVYDLFKQLEPHKRSDFVFPSLHSTIRPMSENT
LGQALKRLGFSGEQHTVHGFRASARTMLVERLKYDESLVEMQLGHNVRDMHGRAYNRTVFLDERREMMQTWSNYLDELKS
SV
>Mature_401_residues
AKITAPLTNTQVKQAKNTDKPYKLSDGGGLYLYISSTGTKSWRFDYTRPFTKKRATLTFGQYPEISLAGARTIRAEYRAL
LAIDIDPADKIRDEARQQRLKQNNTFEIVAAEYIERQTHLSQDTIDHKARYAMYLSQHLGRMPISDIKPIDVLDACRKVE
KQGYLETAKKMRSLAGQVFRYAVQTARCERDVTQDLKGALKPPEVKHYPAITDPEEFAILLRAIDDYDGMFETRIAIKII
PHLFVRSGELRNALWEDFDFDARTWTFTPRKTKRKTGVSLIVPLSDQVYDLFKQLEPHKRSDFVFPSLHSTIRPMSENTL
GQALKRLGFSGEQHTVHGFRASARTMLVERLKYDESLVEMQLGHNVRDMHGRAYNRTVFLDERREMMQTWSNYLDELKSS
V

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=398, Percent_Identity=32.9145728643216, Blast_Score=209, Evalue=3e-55,
Organism=Escherichia coli, GI1788690, Length=402, Percent_Identity=32.5870646766169, Blast_Score=198, Evalue=6e-52,
Organism=Escherichia coli, GI145693166, Length=400, Percent_Identity=31.25, Blast_Score=160, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46483; Mature: 46352

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKITAPLTNTQVKQAKNTDKPYKLSDGGGLYLYISSTGTKSWRFDYTRPFTKKRATLTF
CCEEECCCCCHHHHHHCCCCCCEEECCCCEEEEEEECCCCCCEEECCCCCCCCCCEEEEE
GQYPEISLAGARTIRAEYRALLAIDIDPADKIRDEARQQRLKQNNTFEIVAAEYIERQTH
CCCCCEEECCHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHH
LSQDTIDHKARYAMYLSQHLGRMPISDIKPIDVLDACRKVEKQGYLETAKKMRSLAGQVF
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
RYAVQTARCERDVTQDLKGALKPPEVKHYPAITDPEEFAILLRAIDDYDGMFETRIAIKI
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
IPHLFVRSGELRNALWEDFDFDARTWTFTPRKTKRKTGVSLIVPLSDQVYDLFKQLEPHK
HHHHHHCCCHHHHHHHHCCCCCCEEEEECCCHHHHHCCCEEEEECCHHHHHHHHHCCCCC
RSDFVFPSLHSTIRPMSENTLGQALKRLGFSGEQHTVHGFRASARTMLVERLKYDESLVE
CCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MQLGHNVRDMHGRAYNRTVFLDERREMMQTWSNYLDELKSSV
HHHCCCHHHHCCCHHCCEEEEHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKITAPLTNTQVKQAKNTDKPYKLSDGGGLYLYISSTGTKSWRFDYTRPFTKKRATLTF
CEEECCCCCHHHHHHCCCCCCEEECCCCEEEEEEECCCCCCEEECCCCCCCCCCEEEEE
GQYPEISLAGARTIRAEYRALLAIDIDPADKIRDEARQQRLKQNNTFEIVAAEYIERQTH
CCCCCEEECCHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHH
LSQDTIDHKARYAMYLSQHLGRMPISDIKPIDVLDACRKVEKQGYLETAKKMRSLAGQVF
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
RYAVQTARCERDVTQDLKGALKPPEVKHYPAITDPEEFAILLRAIDDYDGMFETRIAIKI
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
IPHLFVRSGELRNALWEDFDFDARTWTFTPRKTKRKTGVSLIVPLSDQVYDLFKQLEPHK
HHHHHHCCCHHHHHHHHCCCCCCEEEEECCCHHHHHCCCEEEEECCHHHHHHHHHCCCCC
RSDFVFPSLHSTIRPMSENTLGQALKRLGFSGEQHTVHGFRASARTMLVERLKYDESLVE
CCCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MQLGHNVRDMHGRAYNRTVFLDERREMMQTWSNYLDELKSSV
HHHCCCHHHHCCCHHCCEEEEHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7511583; 9278503; 9205837; 7524073 [H]