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The map label for this gene is oprF [H]

Identifier: 148652893

GI number: 148652893

Start: 1312478

End: 1313422

Strand: Direct

Name: oprF [H]

Synonym: PsycPRwf_1086

Alternate gene names: 148652893

Gene position: 1312478-1313422 (Clockwise)

Preceding gene: 148652892

Following gene: 148652894

Centisome position: 44.06

GC content: 39.47

Gene sequence:

>945_bases
ATGACAGCAATACGTTTAAGTATGTTTTTTCCTGTACTTTTCATAGGGTTATCAGGATGTGTGTCTACAGGTTCTAACAG
TAGTGGGGATATTCGTCACGTAGATGGTATTACATGGAATAAACAGACCTCTGTTAGTCCTAGTGACTTTCTTTCTAAAA
AGGTTGAAGCAGATGAAGTACGCTTAGTATTTATTAGAGATGCCGATGATTACTCTGAGCAGACCAGCTCCAATATATCA
ATAAATAATAGATTTCAAGTTAGTCTACAAGAAGGAGGTTATACTACTGTAAATTCGTGCGTAGGGATAAATCAGCTTAG
TGCGCATGCAACAGGCTACAAAGATAACGATTTATTAGCAGACAAACGAAGCTTAGATCTTGCAGGGGGCAATACCTACT
ATTTCTTAGTCACTGTAGAAGGTGATGGTAAAAGCTATATCTCTCAAATCAAAGACTCTGGTCAAGCATTCAAGTTATTA
CAAGGTAAACGTTATCAATCCCATCAAATCAGTCGGGTAGTTCCCAACTGCCCTAGACCAGTAATTACTGAAGCAGCTGA
AGTAGTGACAGCAGCACCTGTAGCACCCGTCTTGAAAGAGAAAGTAACTATTGATTTAGAAGTCCTTTTTGAGACAGATA
AATCAGTTGTTAGACCAAGTTATTATCGGAAGTTAAGCGAGGTAGCTGACTTTATGAATAAGTATCCAAGTACGATCGCA
ACGATTGAGGGGCACACTGATGATCGTGCTAGCGATAGTTACAACTTAGCTTTATCACAGCGCCGAGCAGATGCAGTACG
TAACGTCTTCATTCATGAGTTTGATATTGATTCTAATCGCCTTAAGGCAATTGGCTATGGCGAATCTAAACCAAGAGCCA
CTAATGATACTGCTGAGGGGCGTCAATTAAATAGACGAGTTATGGCAGTGATAGAAGAAAACTAA

Upstream 100 bases:

>100_bases
TGTCGACTATTTGAGGTGTTATTCACAGTGTTAGACTCATATATCTCTAATCTTATAATTTTAGCGTATTAGCTAATACT
TATATTTAGGAATGCTAATA

Downstream 100 bases:

>100_bases
ATATATTATTTAATTTCCTGATTCTCCTAGCAAAGTTTATTTCTAATAAACACTAATAAATCCTCTATAGGAGTTATTAG
TGTTTCCTAAATAATAAAGT

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MTAIRLSMFFPVLFIGLSGCVSTGSNSSGDIRHVDGITWNKQTSVSPSDFLSKKVEADEVRLVFIRDADDYSEQTSSNIS
INNRFQVSLQEGGYTTVNSCVGINQLSAHATGYKDNDLLADKRSLDLAGGNTYYFLVTVEGDGKSYISQIKDSGQAFKLL
QGKRYQSHQISRVVPNCPRPVITEAAEVVTAAPVAPVLKEKVTIDLEVLFETDKSVVRPSYYRKLSEVADFMNKYPSTIA
TIEGHTDDRASDSYNLALSQRRADAVRNVFIHEFDIDSNRLKAIGYGESKPRATNDTAEGRQLNRRVMAVIEEN

Sequences:

>Translated_314_residues
MTAIRLSMFFPVLFIGLSGCVSTGSNSSGDIRHVDGITWNKQTSVSPSDFLSKKVEADEVRLVFIRDADDYSEQTSSNIS
INNRFQVSLQEGGYTTVNSCVGINQLSAHATGYKDNDLLADKRSLDLAGGNTYYFLVTVEGDGKSYISQIKDSGQAFKLL
QGKRYQSHQISRVVPNCPRPVITEAAEVVTAAPVAPVLKEKVTIDLEVLFETDKSVVRPSYYRKLSEVADFMNKYPSTIA
TIEGHTDDRASDSYNLALSQRRADAVRNVFIHEFDIDSNRLKAIGYGESKPRATNDTAEGRQLNRRVMAVIEEN
>Mature_313_residues
TAIRLSMFFPVLFIGLSGCVSTGSNSSGDIRHVDGITWNKQTSVSPSDFLSKKVEADEVRLVFIRDADDYSEQTSSNISI
NNRFQVSLQEGGYTTVNSCVGINQLSAHATGYKDNDLLADKRSLDLAGGNTYYFLVTVEGDGKSYISQIKDSGQAFKLLQ
GKRYQSHQISRVVPNCPRPVITEAAEVVTAAPVAPVLKEKVTIDLEVLFETDKSVVRPSYYRKLSEVADFMNKYPSTIAT
IEGHTDDRASDSYNLALSQRRADAVRNVFIHEFDIDSNRLKAIGYGESKPRATNDTAEGRQLNRRVMAVIEEN

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=100, Percent_Identity=36, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1786962, Length=103, Percent_Identity=31.0679611650485, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 34755; Mature: 34624

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAIRLSMFFPVLFIGLSGCVSTGSNSSGDIRHVDGITWNKQTSVSPSDFLSKKVEADEV
CCEEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEECCCCCCCHHHHHHHCCCCCCE
RLVFIRDADDYSEQTSSNISINNRFQVSLQEGGYTTVNSCVGINQLSAHATGYKDNDLLA
EEEEEECCCCHHHHCCCCCEECCEEEEEECCCCCEEHHHHCCCCHHHHCCCCCCCCCCCC
DKRSLDLAGGNTYYFLVTVEGDGKSYISQIKDSGQAFKLLQGKRYQSHQISRVVPNCPRP
CCCCEEECCCCEEEEEEEEECCCHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHCCCCCCH
VITEAAEVVTAAPVAPVLKEKVTIDLEVLFETDKSVVRPSYYRKLSEVADFMNKYPSTIA
HHHHHHHHHHHCCCHHHHHHHEEEEEEEEEECCCHHHCCHHHHHHHHHHHHHHHCCCEEE
TIEGHTDDRASDSYNLALSQRRADAVRNVFIHEFDIDSNRLKAIGYGESKPRATNDTAEG
EEECCCCCCCCCCEEEEHHHHHHHHHHHHEEEEEECCCCCEEEEECCCCCCCCCCCCHHH
RQLNRRVMAVIEEN
HHHHCEEEEEEECC
>Mature Secondary Structure 
TAIRLSMFFPVLFIGLSGCVSTGSNSSGDIRHVDGITWNKQTSVSPSDFLSKKVEADEV
CEEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEECCCCCCCHHHHHHHCCCCCCE
RLVFIRDADDYSEQTSSNISINNRFQVSLQEGGYTTVNSCVGINQLSAHATGYKDNDLLA
EEEEEECCCCHHHHCCCCCEECCEEEEEECCCCCEEHHHHCCCCHHHHCCCCCCCCCCCC
DKRSLDLAGGNTYYFLVTVEGDGKSYISQIKDSGQAFKLLQGKRYQSHQISRVVPNCPRP
CCCCEEECCCCEEEEEEEEECCCHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHCCCCCCH
VITEAAEVVTAAPVAPVLKEKVTIDLEVLFETDKSVVRPSYYRKLSEVADFMNKYPSTIA
HHHHHHHHHHHCCCHHHHHHHEEEEEEEEEECCCHHHCCHHHHHHHHHHHHHHHCCCEEE
TIEGHTDDRASDSYNLALSQRRADAVRNVFIHEFDIDSNRLKAIGYGESKPRATNDTAEG
EEECCCCCCCCCCEEEEHHHHHHHHHHHHEEEEEECCCCCEEEEECCCCCCCCCCCCHHH
RQLNRRVMAVIEEN
HHHHCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2447060; 10984043 [H]