| Definition | Psychrobacter sp. PRwf-1 chromosome, complete genome. |
|---|---|
| Accession | NC_009524 |
| Length | 2,978,976 |
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The map label for this gene is lpxB [H]
Identifier: 148652729
GI number: 148652729
Start: 1101854
End: 1103161
Strand: Direct
Name: lpxB [H]
Synonym: PsycPRwf_0922
Alternate gene names: 148652729
Gene position: 1101854-1103161 (Clockwise)
Preceding gene: 148652727
Following gene: 148652730
Centisome position: 36.99
GC content: 48.01
Gene sequence:
>1308_bases ATGCTAGCAAGTGCTGCAAGTCAGCCCCTCTCAACATCCTCTTTTGACGCATCACTAAGTAAGCCTCTGGTGATTGGTAT TGTGGCTGGTGAGGCTTCAGGAGACAGCTTGGGCGCAGATTTTATGGCGCAGATGAATAACCTATATGACAATGTAGTCT GGGTAGGTGTGGGCGGACCAAAAATGAAGGCGCAAGGTCTGCAGTCGCTTTTTCCATTAGAGCGCTTGGCGGTGATGGGC CTGGTGGAGGTTTTGTCACAGCTGCCTGATTTGCTCAAAGCGCGTAAAGAGTTGGTTCAGGCATTTGCTCACGCCAATAT TGATTGGTTTATTGGTATTGATGCGCCAGATTTTAACCTACGTGTGGCCAAAAAGCTCAAGCCCAAAGGTATATTTTGTG TGCAATACGTCAGCCCCTCAATTTGGGCTTGGCGTGAGTCTCGTATTGAGTCCATCAAGCAAGCCACGCATTTGGTGCTG TGTCTATTTCCTTTTGAGCTTGAGGTATATCAGCGTCATAATCATCCGGCCATCTGTGTGGGTCATCCGCTGCTGCATAA TCTGCCCAGAGAGCTGGTGGAGATTTCGACACTTGAGCAGCGCCGAGAGTTGGTGTGGAATAACTCTGAGCTGCACAGCT TTTTTGCTGAGCGTAAAGAGGATATCAGTCTTATGATTTGCCTGATGCCAGGCTCTCGGCGCTCTGAGATTAATGCCATT TTGCCGTTAATGTTAGATGCTGTGGCCCGCTTATTAATGGTCGATGAGCACTTATGCTTTGTGATACCGACCGTCGATAA AAACCATCAATATATCGTACAAGATTTAATCGATCGTCAAGATGAGTCGCTACGGGCAGCAGTGGCTGTGGCCTATGATG AAAGTCAGACTAAGGCTGATTTTAGTCAGTCTATCATGGCTATGTGCGACATGATTGTGCTGGCTTCTGGTACGGCTACC TTAGAGGCTATGCTGCTTAACCGTCCGATGGTGGTGGTGTATCAAATGAAAAAACTCACCTATGCCATTGCCAGTCGTTT GGTCAAGGTGCCTTATGTGTCCCTGCCCAATATTTTGGCCGGTGAGCAAATTGTGCCTGAGCTTATTCAGGATCAAGCGA CAGGAGACAGTATTTGCCGTGCAGTAACCCGCCTGATGCGTACCAGAGTCTATGATGAGCAGCTTAATCGCTTAGCACAG ACCACCGCTTGGCTGAAGCAACAAAGCAGTCAAACCCCAGTGTCGGCAGTCATCAATACCTGGCATGATTATCAAAATCA GCGGTTAAATGGTCAGCCATTATTGTAG
Upstream 100 bases:
>100_bases ACAAAAATTTGTTATACTGGTGCCTATATTTACACAGGGGCGCTGCTGGGTTTGTCCCTGATTATTTCTAGGTCCATTTG ATAAAAAAGTAGAGTTTGCC
Downstream 100 bases:
>100_bases CGGACAAAAAATTAATTCATAAAAAGATGTTGTGGTTATGATGGTAATTGAACAAAGTATTTATTCTTCCTCGCAAAGCA CAGGTACGGCCCAAGCCAAC
Product: lipid-A-disaccharide synthase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 435; Mature: 435
Protein sequence:
>435_residues MLASAASQPLSTSSFDASLSKPLVIGIVAGEASGDSLGADFMAQMNNLYDNVVWVGVGGPKMKAQGLQSLFPLERLAVMG LVEVLSQLPDLLKARKELVQAFAHANIDWFIGIDAPDFNLRVAKKLKPKGIFCVQYVSPSIWAWRESRIESIKQATHLVL CLFPFELEVYQRHNHPAICVGHPLLHNLPRELVEISTLEQRRELVWNNSELHSFFAERKEDISLMICLMPGSRRSEINAI LPLMLDAVARLLMVDEHLCFVIPTVDKNHQYIVQDLIDRQDESLRAAVAVAYDESQTKADFSQSIMAMCDMIVLASGTAT LEAMLLNRPMVVVYQMKKLTYAIASRLVKVPYVSLPNILAGEQIVPELIQDQATGDSICRAVTRLMRTRVYDEQLNRLAQ TTAWLKQQSSQTPVSAVINTWHDYQNQRLNGQPLL
Sequences:
>Translated_435_residues MLASAASQPLSTSSFDASLSKPLVIGIVAGEASGDSLGADFMAQMNNLYDNVVWVGVGGPKMKAQGLQSLFPLERLAVMG LVEVLSQLPDLLKARKELVQAFAHANIDWFIGIDAPDFNLRVAKKLKPKGIFCVQYVSPSIWAWRESRIESIKQATHLVL CLFPFELEVYQRHNHPAICVGHPLLHNLPRELVEISTLEQRRELVWNNSELHSFFAERKEDISLMICLMPGSRRSEINAI LPLMLDAVARLLMVDEHLCFVIPTVDKNHQYIVQDLIDRQDESLRAAVAVAYDESQTKADFSQSIMAMCDMIVLASGTAT LEAMLLNRPMVVVYQMKKLTYAIASRLVKVPYVSLPNILAGEQIVPELIQDQATGDSICRAVTRLMRTRVYDEQLNRLAQ TTAWLKQQSSQTPVSAVINTWHDYQNQRLNGQPLL >Mature_435_residues MLASAASQPLSTSSFDASLSKPLVIGIVAGEASGDSLGADFMAQMNNLYDNVVWVGVGGPKMKAQGLQSLFPLERLAVMG LVEVLSQLPDLLKARKELVQAFAHANIDWFIGIDAPDFNLRVAKKLKPKGIFCVQYVSPSIWAWRESRIESIKQATHLVL CLFPFELEVYQRHNHPAICVGHPLLHNLPRELVEISTLEQRRELVWNNSELHSFFAERKEDISLMICLMPGSRRSEINAI LPLMLDAVARLLMVDEHLCFVIPTVDKNHQYIVQDLIDRQDESLRAAVAVAYDESQTKADFSQSIMAMCDMIVLASGTAT LEAMLLNRPMVVVYQMKKLTYAIASRLVKVPYVSLPNILAGEQIVPELIQDQATGDSICRAVTRLMRTRVYDEQLNRLAQ TTAWLKQQSSQTPVSAVINTWHDYQNQRLNGQPLL
Specific function: Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell [H]
COG id: COG0763
COG function: function code M; Lipid A disaccharide synthetase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lpxB family [H]
Homologues:
Organism=Escherichia coli, GI1786379, Length=353, Percent_Identity=38.5269121813031, Blast_Score=233, Evalue=2e-62,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003835 [H]
Pfam domain/function: PF02684 LpxB [H]
EC number: =2.4.1.182 [H]
Molecular weight: Translated: 48721; Mature: 48721
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLASAASQPLSTSSFDASLSKPLVIGIVAGEASGDSLGADFMAQMNNLYDNVVWVGVGGP CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEECCCC KMKAQGLQSLFPLERLAVMGLVEVLSQLPDLLKARKELVQAFAHANIDWFIGIDAPDFNL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCE RVAKKLKPKGIFCVQYVSPSIWAWRESRIESIKQATHLVLCLFPFELEVYQRHNHPAICV EEHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHCCCCCEEEE GHPLLHNLPRELVEISTLEQRRELVWNNSELHSFFAERKEDISLMICLMPGSRRSEINAI CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHH LPLMLDAVARLLMVDEHLCFVIPTVDKNHQYIVQDLIDRQDESLRAAVAVAYDESQTKAD HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCHHHHHEEEEECCCHHHHH FSQSIMAMCDMIVLASGTATLEAMLLNRPMVVVYQMKKLTYAIASRLVKVPYVSLPNILA HHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHC GEQIVPELIQDQATGDSICRAVTRLMRTRVYDEQLNRLAQTTAWLKQQSSQTPVSAVINT CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH WHDYQNQRLNGQPLL HHHHHCCCCCCCCCC >Mature Secondary Structure MLASAASQPLSTSSFDASLSKPLVIGIVAGEASGDSLGADFMAQMNNLYDNVVWVGVGGP CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEECCCC KMKAQGLQSLFPLERLAVMGLVEVLSQLPDLLKARKELVQAFAHANIDWFIGIDAPDFNL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCE RVAKKLKPKGIFCVQYVSPSIWAWRESRIESIKQATHLVLCLFPFELEVYQRHNHPAICV EEHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHCCCCCEEEE GHPLLHNLPRELVEISTLEQRRELVWNNSELHSFFAERKEDISLMICLMPGSRRSEINAI CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHH LPLMLDAVARLLMVDEHLCFVIPTVDKNHQYIVQDLIDRQDESLRAAVAVAYDESQTKAD HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCHHHHHEEEEECCCHHHHH FSQSIMAMCDMIVLASGTATLEAMLLNRPMVVVYQMKKLTYAIASRLVKVPYVSLPNILA HHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHC GEQIVPELIQDQATGDSICRAVTRLMRTRVYDEQLNRLAQTTAWLKQQSSQTPVSAVINT CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH WHDYQNQRLNGQPLL HHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA