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The map label for this gene is ccmH [H]

Identifier: 148652613

GI number: 148652613

Start: 957653

End: 958285

Strand: Direct

Name: ccmH [H]

Synonym: PsycPRwf_0804

Alternate gene names: 148652613

Gene position: 957653-958285 (Clockwise)

Preceding gene: 148652612

Following gene: 148652614

Centisome position: 32.15

GC content: 45.5

Gene sequence:

>633_bases
ATGAATGCATCAAGCCTAACATTACAGTCATTTGGCCGAGCCCTAAAATATAGCCTAAGTATCTTAGTTCTGGCCTTTAG
CCTTATGGGAATTCATACTTCGGCGCAGGCTGCCATTGAGGTGTACGAGTTTAACAGCCCCAGCCAAGAGGCGCAGTATA
AAGCCTTGATTGAAGAGTTTCGTTGCCCAAAGTGCCAAAACCAAAACTTAGCCGGCTCTGACTCACAAATTGCACAAGAC
CTAAAGCGTAAAACTTATGAGATGGTCATCGCCGGACAAAGTGATGCGCAAATTCGCGAATACATGTATGAGCGTTACGG
CGACTTTATCAGCTATAAACCGCCTGTACGTCCTTCTACTTGGATCTTATGGTATTTTCCACCACTGATTTTAATTTTAT
TGGTAGCGGGCTGGTTGTGGCGCACCAAACAAGGCCAGAGAAATAAGGCGTTGGTCACAGCACAGGCTGCTCAAAGTGAT
ACAAAAGCGGCGAGCCGCCTAACCGATGCTGACAAAATTGAGTCAGAATTATCCAGTGAAGAAGCAGCCAAGCTAAATGC
GTTACTACGCAAACACGGCTCAACATCTGATGCAAATAGCCCAACAAAACGCTCCGATAGCGATTTAAAATAG

Upstream 100 bases:

>100_bases
CGCGTATTGAACCTTGTGTCTCTTTGCTCAATAAGCTTGGTGAACAACAAGCGGATTTATCTGCCGCAGATACCGCCAAA
AATATCGCAGAGGTGTGTAA

Downstream 100 bases:

>100_bases
CCTAAGCTTTTATAACGCAGCAGTGAATGTTGGCTTCACAGCCTATCTTATGCGCTTTATACCTCAACTTGTAAGGAGTT
AAATCATGCCAACGTTAGTG

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MNASSLTLQSFGRALKYSLSILVLAFSLMGIHTSAQAAIEVYEFNSPSQEAQYKALIEEFRCPKCQNQNLAGSDSQIAQD
LKRKTYEMVIAGQSDAQIREYMYERYGDFISYKPPVRPSTWILWYFPPLILILLVAGWLWRTKQGQRNKALVTAQAAQSD
TKAASRLTDADKIESELSSEEAAKLNALLRKHGSTSDANSPTKRSDSDLK

Sequences:

>Translated_210_residues
MNASSLTLQSFGRALKYSLSILVLAFSLMGIHTSAQAAIEVYEFNSPSQEAQYKALIEEFRCPKCQNQNLAGSDSQIAQD
LKRKTYEMVIAGQSDAQIREYMYERYGDFISYKPPVRPSTWILWYFPPLILILLVAGWLWRTKQGQRNKALVTAQAAQSD
TKAASRLTDADKIESELSSEEAAKLNALLRKHGSTSDANSPTKRSDSDLK
>Mature_210_residues
MNASSLTLQSFGRALKYSLSILVLAFSLMGIHTSAQAAIEVYEFNSPSQEAQYKALIEEFRCPKCQNQNLAGSDSQIAQD
LKRKTYEMVIAGQSDAQIREYMYERYGDFISYKPPVRPSTWILWYFPPLILILLVAGWLWRTKQGQRNKALVTAQAAQSD
TKAASRLTDADKIESELSSEEAAKLNALLRKHGSTSDANSPTKRSDSDLK

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=125, Percent_Identity=41.6, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1790512, Length=83, Percent_Identity=37.3493975903614, Blast_Score=74, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 23521; Mature: 23521

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNASSLTLQSFGRALKYSLSILVLAFSLMGIHTSAQAAIEVYEFNSPSQEAQYKALIEEF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEEEECCCCCHHHHHHHHHHHH
RCPKCQNQNLAGSDSQIAQDLKRKTYEMVIAGQSDAQIREYMYERYGDFISYKPPVRPST
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHCCCCCCCCCCCCCC
WILWYFPPLILILLVAGWLWRTKQGQRNKALVTAQAAQSDTKAASRLTDADKIESELSSE
EEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHH
EAAKLNALLRKHGSTSDANSPTKRSDSDLK
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNASSLTLQSFGRALKYSLSILVLAFSLMGIHTSAQAAIEVYEFNSPSQEAQYKALIEEF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHEEEEECCCCCHHHHHHHHHHHH
RCPKCQNQNLAGSDSQIAQDLKRKTYEMVIAGQSDAQIREYMYERYGDFISYKPPVRPST
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHCCCCCCCCCCCCCC
WILWYFPPLILILLVAGWLWRTKQGQRNKALVTAQAAQSDTKAASRLTDADKIESELSSE
EEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHH
EAAKLNALLRKHGSTSDANSPTKRSDSDLK
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]