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The map label for this gene is cspV [H]

Identifier: 148652425

GI number: 148652425

Start: 737109

End: 737324

Strand: Direct

Name: cspV [H]

Synonym: PsycPRwf_0613

Alternate gene names: 148652425

Gene position: 737109-737324 (Clockwise)

Preceding gene: 148652424

Following gene: 148652426

Centisome position: 24.74

GC content: 43.52

Gene sequence:

>216_bases
ATGTCAGAACGTGTACAAGGTACTGTTAAGTGGTTCAACGAAGCTAAAGGTTTTGGTTTCATCGCACAAGACGATGGCGG
CCAAGACGTATTTGCTCATTACAGTGCTATTCAAGGCAGCGGTTTCAAAACCCTAGCCGAAGGTCAAAAAGTTACTTTCG
TATTAGGCCAAGGCCAAAAAGGTCCACAAGCTGAACAAATCGAATCAGCTGAATAA

Upstream 100 bases:

>100_bases
TACTGCTCGATTTACGTTTTCTACCGGTGTAATCCATTGAGGTTTGCCCAGTTAAAAGCATCATGACTATAGTTAAATCA
ATTTTATATTAGGAAAAGTT

Downstream 100 bases:

>100_bases
TTTCTTGTAGGCTTAGACCTACAAATGAGTATTAATCATCTCAATAGATGATGGTACTTGAAAGAGACAACCCTATGGGT
TGTCTCTTTTTTTTGTTTGA

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 71; Mature: 70

Protein sequence:

>71_residues
MSERVQGTVKWFNEAKGFGFIAQDDGGQDVFAHYSAIQGSGFKTLAEGQKVTFVLGQGQKGPQAEQIESAE

Sequences:

>Translated_71_residues
MSERVQGTVKWFNEAKGFGFIAQDDGGQDVFAHYSAIQGSGFKTLAEGQKVTFVLGQGQKGPQAEQIESAE
>Mature_70_residues
SERVQGTVKWFNEAKGFGFIAQDDGGQDVFAHYSAIQGSGFKTLAEGQKVTFVLGQGQKGPQAEQIESAE

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=60.9375, Blast_Score=90, Evalue=2e-20,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=62.1212121212121, Blast_Score=89, Evalue=5e-20,
Organism=Escherichia coli, GI1789979, Length=69, Percent_Identity=57.9710144927536, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI2367114, Length=67, Percent_Identity=56.7164179104478, Blast_Score=87, Evalue=3e-19,
Organism=Escherichia coli, GI1787839, Length=67, Percent_Identity=56.7164179104478, Blast_Score=85, Evalue=1e-18,
Organism=Escherichia coli, GI1787834, Length=67, Percent_Identity=55.2238805970149, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI1787107, Length=66, Percent_Identity=57.5757575757576, Blast_Score=79, Evalue=4e-17,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=47.6190476190476, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7638; Mature: 7507

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERVQGTVKWFNEAKGFGFIAQDDGGQDVFAHYSAIQGSGFKTLAEGQKVTFVLGQGQK
CCCCHHHHHHHHCCCCCCEEEEECCCCCCEEEEHHCCCCCCCEECCCCCEEEEEEECCCC
GPQAEQIESAE
CCCCCCCCCCC
>Mature Secondary Structure 
SERVQGTVKWFNEAKGFGFIAQDDGGQDVFAHYSAIQGSGFKTLAEGQKVTFVLGQGQK
CCCHHHHHHHHCCCCCCEEEEECCCCCCEEEEHHCCCCCCCEECCCCCEEEEEEECCCC
GPQAEQIESAE
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]