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The map label for this gene is licD [H]

Identifier: 148643604

GI number: 148643604

Start: 1579333

End: 1580169

Strand: Reverse

Name: licD [H]

Synonym: Msm_1544

Alternate gene names: 148643604

Gene position: 1580169-1579333 (Counterclockwise)

Preceding gene: 148643613

Following gene: 148643601

Centisome position: 85.27

GC content: 31.42

Gene sequence:

>837_bases
ATGATGCATTATACTGATTATTCTGATGAAACTATTCACAAACTGCAGGAATTGGAGCTTATGATTCTAAAGGATTTTAT
AGCTATTTGTGAAGAAAACAACATTGAGTATTTTATTTACGGAGGCAGTGCATTAGGTGCCGTCAGACATGGCGGTTTTA
TTCCATGGGATGATGACATAGACATTATTATGTTTAGAAAAGACTATGAAAAGTTTAAAAAAGTCGCATTATCCAAACCC
AACAATAAATATAATTTTTTAACAAGCAAAACAAAGGATTACTTCTTTTTATTTTCAAAAATCATGCTCAAAAACACTAT
TTTTGAAGAATGGTGGGTCAATCAGGTAGATTTTGATTTAGGAATTGACATTGACATATTTGTATTGGACAAAGTTCCGG
ACAATAAACTAAAACGATTCTTCCATGTAAAACGTTGCCGTGTCTTAGACAGATTACTTGCAATGTCTGTTATAAAATTT
AAAGGATATCCTTCATTAGTTCAGGCATTAGCCAATACAGGACATGCATTTTTAAAGCTGTTTAATATTTCAAGAGAATC
ATTATTTGATAAAACCCATAAATTACTGGACAAATACAATGATAAAGACTGTGAATGTGTCTGTGATATTTCAGCTCTTC
ACCATCCCCAAATTTATAAAATAAGTGATTTCAAACCGGGAAAAACAATAATGTTTGAAGATGTTGAAGTTCACTGCCCG
AATAATCTTGACAGCATCCTTACACAAATCTATGGAGATTATATGAAATTACCTCCAGAATCTGAAAGATATAATCATAT
AACTCAAAAAATAGATTTTGGCCCTTATGAAGACTGA

Upstream 100 bases:

>100_bases
TAAATTATACCAAACATAATTAATAAAAATTTCCATTAGAAAAGTTATATATGTATATTAATTATAAATAATAATTTAAC
AAGTTTTTTAAAAAGGGAAA

Downstream 100 bases:

>100_bases
TTTACAATTTCCCTTATTTTTTTAGCATTTTTTTCATAAATTGACCTGTTGTCTTTGGTTTTGGATGTGGATGACTTGTT
TTTAATAGCTGACTTGATAA

Product: lipopolysaccharide cholinephosphotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MMHYTDYSDETIHKLQELELMILKDFIAICEENNIEYFIYGGSALGAVRHGGFIPWDDDIDIIMFRKDYEKFKKVALSKP
NNKYNFLTSKTKDYFFLFSKIMLKNTIFEEWWVNQVDFDLGIDIDIFVLDKVPDNKLKRFFHVKRCRVLDRLLAMSVIKF
KGYPSLVQALANTGHAFLKLFNISRESLFDKTHKLLDKYNDKDCECVCDISALHHPQIYKISDFKPGKTIMFEDVEVHCP
NNLDSILTQIYGDYMKLPPESERYNHITQKIDFGPYED

Sequences:

>Translated_278_residues
MMHYTDYSDETIHKLQELELMILKDFIAICEENNIEYFIYGGSALGAVRHGGFIPWDDDIDIIMFRKDYEKFKKVALSKP
NNKYNFLTSKTKDYFFLFSKIMLKNTIFEEWWVNQVDFDLGIDIDIFVLDKVPDNKLKRFFHVKRCRVLDRLLAMSVIKF
KGYPSLVQALANTGHAFLKLFNISRESLFDKTHKLLDKYNDKDCECVCDISALHHPQIYKISDFKPGKTIMFEDVEVHCP
NNLDSILTQIYGDYMKLPPESERYNHITQKIDFGPYED
>Mature_278_residues
MMHYTDYSDETIHKLQELELMILKDFIAICEENNIEYFIYGGSALGAVRHGGFIPWDDDIDIIMFRKDYEKFKKVALSKP
NNKYNFLTSKTKDYFFLFSKIMLKNTIFEEWWVNQVDFDLGIDIDIFVLDKVPDNKLKRFFHVKRCRVLDRLLAMSVIKF
KGYPSLVQALANTGHAFLKLFNISRESLFDKTHKLLDKYNDKDCECVCDISALHHPQIYKISDFKPGKTIMFEDVEVHCP
NNLDSILTQIYGDYMKLPPESERYNHITQKIDFGPYED

Specific function: Transfers phosphorylcholine (ChoP) from choline diphosphonucleoside to the lipopolysaccharide (LPS) [H]

COG id: COG3475

COG function: function code M; LPS biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the licD transferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007074 [H]

Pfam domain/function: PF04991 LicD [H]

EC number: NA

Molecular weight: Translated: 32811; Mature: 32811

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMHYTDYSDETIHKLQELELMILKDFIAICEENNIEYFIYGGSALGAVRHGGFIPWDDDI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCCCCCCC
DIIMFRKDYEKFKKVALSKPNNKYNFLTSKTKDYFFLFSKIMLKNTIFEEWWVNQVDFDL
CEEEEEHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GIDIDIFVLDKVPDNKLKRFFHVKRCRVLDRLLAMSVIKFKGYPSLVQALANTGHAFLKL
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHH
FNISRESLFDKTHKLLDKYNDKDCECVCDISALHHPQIYKISDFKPGKTIMFEDVEVHCP
HHCCHHHHHHHHHHHHHCCCCCCCEEEEEHHHCCCCCEEEECCCCCCCEEEEECEEEECC
NNLDSILTQIYGDYMKLPPESERYNHITQKIDFGPYED
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MMHYTDYSDETIHKLQELELMILKDFIAICEENNIEYFIYGGSALGAVRHGGFIPWDDDI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCCCCCCC
DIIMFRKDYEKFKKVALSKPNNKYNFLTSKTKDYFFLFSKIMLKNTIFEEWWVNQVDFDL
CEEEEEHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
GIDIDIFVLDKVPDNKLKRFFHVKRCRVLDRLLAMSVIKFKGYPSLVQALANTGHAFLKL
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHH
FNISRESLFDKTHKLLDKYNDKDCECVCDISALHHPQIYKISDFKPGKTIMFEDVEVHCP
HHCCHHHHHHHHHHHHHCCCCCCCEEEEEHHHCCCCCEEEECCCCCCCEEEEECEEEECC
NNLDSILTQIYGDYMKLPPESERYNHITQKIDFGPYED
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800; 10632893 [H]