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The map label for this gene is licD [H]

Identifier: 148643575

GI number: 148643575

Start: 1538316

End: 1539182

Strand: Reverse

Name: licD [H]

Synonym: Msm_1515

Alternate gene names: 148643575

Gene position: 1539182-1538316 (Counterclockwise)

Preceding gene: 148643578

Following gene: 148643571

Centisome position: 83.06

GC content: 24.68

Gene sequence:

>867_bases
ATGGCGATTATAAAAATACCTGAAAAATTCAATAAATATGACCCCCAAATCTTAAAACACGTTCAAGATTTAAATTTAAT
GATGTTAACTGATTTTATTAAAATATGTGAAGAAAATGATATAGAATACTTTGCAGATTCAGGTACACTAATTGGAGCTA
TAAGACATAATGGATTTATTCCTTGGGATGATGATGTTGATTTAATTCTATTAAGGGATCAGTACGAAAAATTATTGGAC
ATATTGGAGAAATCACCTCAAGATAAATATGAATTATTAAGTCCTAGAAATAAAAAAGGTTACTGTAGACTTTATTCACA
ATGGAACTTAAAAGGAACAAAAACTGAAGAATATTATGACAATAATACTGATTTTACCCTAGGTTTAAGTTTAGATATAT
TCGTATTAGACAACATCCCTGATGATACAAATAAAAGAAAAAAATTCTTATTTAAATGGAAACTTTTAAGAAAATTAATT
TGGATTTATGAAATAACAAACAGTGAAGCATACATATCTAAAAATAAAGAAAGAATTGGAAAAGTTATTAAAATTATTTT
TAAATTATTTAGAATAAATTTTCAAAAAATAAAAAAATATGGAACCAACTTTGTGGATAAATATCTTAATGAAAAATGTG
ACTGCGTATGCAATCTTAGTACAACTTACAATACCCCAAGAATAATACCTAAATCTTCATTAAGACCTGCTAAAAAAGTC
AAATTTGAAAATATTGAAATTAATGTTCCAAATGATTATGACACATATTTAACTTTATTATATGATAAAAATTATATGGA
ATTGCCCCCAGAAAATGAAAGATACAATCATATTTATAATACTGTCGATTTTGGACCTTATGAATAA

Upstream 100 bases:

>100_bases
TTTATAAAATAAATAATCAATTTTAAATCCATTAATTAAATACCATAATATTTATGTAATTAATTATATATAAATTAAAA
TTAATAATTAGAGGGAAACA

Downstream 100 bases:

>100_bases
GTTCATCATAAATTATTAAATTTATTATTATTAAAATCTTCCATTACTGAAGATATTTCTTTAGAAATATTAATATCAAT
ATATGAACCTGTTTTATTTA

Product: lipopolysaccharide cholinephosphotransferase LicD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MAIIKIPEKFNKYDPQILKHVQDLNLMMLTDFIKICEENDIEYFADSGTLIGAIRHNGFIPWDDDVDLILLRDQYEKLLD
ILEKSPQDKYELLSPRNKKGYCRLYSQWNLKGTKTEEYYDNNTDFTLGLSLDIFVLDNIPDDTNKRKKFLFKWKLLRKLI
WIYEITNSEAYISKNKERIGKVIKIIFKLFRINFQKIKKYGTNFVDKYLNEKCDCVCNLSTTYNTPRIIPKSSLRPAKKV
KFENIEINVPNDYDTYLTLLYDKNYMELPPENERYNHIYNTVDFGPYE

Sequences:

>Translated_288_residues
MAIIKIPEKFNKYDPQILKHVQDLNLMMLTDFIKICEENDIEYFADSGTLIGAIRHNGFIPWDDDVDLILLRDQYEKLLD
ILEKSPQDKYELLSPRNKKGYCRLYSQWNLKGTKTEEYYDNNTDFTLGLSLDIFVLDNIPDDTNKRKKFLFKWKLLRKLI
WIYEITNSEAYISKNKERIGKVIKIIFKLFRINFQKIKKYGTNFVDKYLNEKCDCVCNLSTTYNTPRIIPKSSLRPAKKV
KFENIEINVPNDYDTYLTLLYDKNYMELPPENERYNHIYNTVDFGPYE
>Mature_287_residues
AIIKIPEKFNKYDPQILKHVQDLNLMMLTDFIKICEENDIEYFADSGTLIGAIRHNGFIPWDDDVDLILLRDQYEKLLDI
LEKSPQDKYELLSPRNKKGYCRLYSQWNLKGTKTEEYYDNNTDFTLGLSLDIFVLDNIPDDTNKRKKFLFKWKLLRKLIW
IYEITNSEAYISKNKERIGKVIKIIFKLFRINFQKIKKYGTNFVDKYLNEKCDCVCNLSTTYNTPRIIPKSSLRPAKKVK
FENIEINVPNDYDTYLTLLYDKNYMELPPENERYNHIYNTVDFGPYE

Specific function: Transfers phosphorylcholine (ChoP) from choline diphosphonucleoside to the lipopolysaccharide (LPS) [H]

COG id: COG3475

COG function: function code M; LPS biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the licD transferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007074 [H]

Pfam domain/function: PF04991 LicD [H]

EC number: NA

Molecular weight: Translated: 34410; Mature: 34279

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIIKIPEKFNKYDPQILKHVQDLNLMMLTDFIKICEENDIEYFADSGTLIGAIRHNGFI
CEEEECCHHCCCCCHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCC
PWDDDVDLILLRDQYEKLLDILEKSPQDKYELLSPRNKKGYCRLYSQWNLKGTKTEEYYD
CCCCCCCEEEEHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEEEEECCCCCCCHHHCC
NNTDFTLGLSLDIFVLDNIPDDTNKRKKFLFKWKLLRKLIWIYEITNSEAYISKNKERIG
CCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCEECCCHHHHH
KVIKIIFKLFRINFQKIKKYGTNFVDKYLNEKCDCVCNLSTTYNTPRIIPKSSLRPAKKV
HHHHHHHHHHHCCHHHHHHHCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHE
KFENIEINVPNDYDTYLTLLYDKNYMELPPENERYNHIYNTVDFGPYE
EEEEEEEECCCCCCCEEEEEECCCEEECCCCCCCHHHHHCCCCCCCCC
>Mature Secondary Structure 
AIIKIPEKFNKYDPQILKHVQDLNLMMLTDFIKICEENDIEYFADSGTLIGAIRHNGFI
EEEECCHHCCCCCHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCC
PWDDDVDLILLRDQYEKLLDILEKSPQDKYELLSPRNKKGYCRLYSQWNLKGTKTEEYYD
CCCCCCCEEEEHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEEEEECCCCCCCHHHCC
NNTDFTLGLSLDIFVLDNIPDDTNKRKKFLFKWKLLRKLIWIYEITNSEAYISKNKERIG
CCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCEECCCHHHHH
KVIKIIFKLFRINFQKIKKYGTNFVDKYLNEKCDCVCNLSTTYNTPRIIPKSSLRPAKKV
HHHHHHHHHHHCCHHHHHHHCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHE
KFENIEINVPNDYDTYLTLLYDKNYMELPPENERYNHIYNTVDFGPYE
EEEEEEEECCCCCCCEEEEEECCCEEECCCCCCCHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800; 10632893 [H]