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The map label for this gene is fdhB [H]

Identifier: 148643522

GI number: 148643522

Start: 1486256

End: 1487404

Strand: Reverse

Name: fdhB [H]

Synonym: Msm_1462

Alternate gene names: 148643522

Gene position: 1487404-1486256 (Counterclockwise)

Preceding gene: 148643523

Following gene: 148643521

Centisome position: 80.26

GC content: 34.81

Gene sequence:

>1149_bases
ATGAGTTCAAATTATATTCTAGCTCGTTCTAAAGACGAAGAGATATTGAAAAAAGCTGCTGTTGGAGGAGCTGTAACCGG
AATTTTACAATATTTATTAGACAACAACATTATAGACGGTGTTTTAACATTAAAACCTGAAGATGATATCTATGATGGAA
TTCCAACTATTGCAACAACCAGTGAAGAATTATTAAAAACAAGCGGTTCACTTCATTGTGCACCAACAATGACTGCAGAC
CTCATCAGCAAATATTTATCTGATAAAAAAATCGGAATAGCTGTAAAACCATGTGATGCAAAAGCAGTAAATGAATTAAT
TAAAAGACACAGAATCAATCCTGACAATATTTACACTATAGGACTGAACTGTGGAGGAACAATAAGTCCTATAACAGCAC
GTGAAATGCTTAAATTATACTATGACATTGATCCAAGTTCTGTTGTTAAAGAAGAAATTGCAAAAGGTAAATTCATAGTT
GAATTAGAAGACGGCAGCGAAAAAGCAGTCAGTATCGATGAACTGGAAGAAAACGGATATGGTAGAAGACATAACTGCCA
AAGATGTGACCTTAAAGTTCCACGTAATGCAGATATAGCCTGTGGAAACTGGGGTGCTGAAGACGGCTGGACATTCATTG
AAATAAATTCAGAAAAAGGAGCAAAAATAGTAAACCAGGCAAAAGCTGAAGGTTACATCGAAGGTAAAACACCTAGTGAA
AAAGCTATTGGAATAAGAAGCAAAATAGAAAATCTCATGACAAAAATGGGTGAAAAAGAAAAAACCTCACTTTTAGACGA
AGATATTTCCATTGGCTCTGATGAATGGAACAGATGTATTCAATGTTATGCATGTAGAGACATATGTCCAATCTGCTGGT
GTAATGAATGTGAATTAGAAAAATCATACTTTGAAAATGAAAACGAAAACTGTCCGCCAAGCGCTATTTCATTCCAGGGT
GTAAGATTATCCCACATGGCATTTAGTTGTGTAAACTGCGGACAGTGCGGAGACGTATGTCCTATGGAAATACCTGTTGA
TAAACTATTCGACAAAATACAAAGAAAATATAAAAATAGAACTGGATATATTGCAGGAATATCCGAAGAGAAACCTCCAT
TATACAGTCCAAAAAAAGAGATTTTATAA

Upstream 100 bases:

>100_bases
AAATAGCTGTTCCAGACATTGTAAATGAAAATCTTTCTGAAATTGAAATTTTAATGAAAATTTCCGAAAAATTAGATATT
GATTTATAGAAGGTATGTTT

Downstream 100 bases:

>100_bases
AATAAAAGGTGATAATATGAGTGATGTTAAAATAGTAGGATTATTATGTAATTGGTGTTGTTATGGTGGTGCAGATACTG
CCGGGACTGCAAGAATGCAA

Product: formate dehydrogenase, beta subunit, FdhB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MSSNYILARSKDEEILKKAAVGGAVTGILQYLLDNNIIDGVLTLKPEDDIYDGIPTIATTSEELLKTSGSLHCAPTMTAD
LISKYLSDKKIGIAVKPCDAKAVNELIKRHRINPDNIYTIGLNCGGTISPITAREMLKLYYDIDPSSVVKEEIAKGKFIV
ELEDGSEKAVSIDELEENGYGRRHNCQRCDLKVPRNADIACGNWGAEDGWTFIEINSEKGAKIVNQAKAEGYIEGKTPSE
KAIGIRSKIENLMTKMGEKEKTSLLDEDISIGSDEWNRCIQCYACRDICPICWCNECELEKSYFENENENCPPSAISFQG
VRLSHMAFSCVNCGQCGDVCPMEIPVDKLFDKIQRKYKNRTGYIAGISEEKPPLYSPKKEIL

Sequences:

>Translated_382_residues
MSSNYILARSKDEEILKKAAVGGAVTGILQYLLDNNIIDGVLTLKPEDDIYDGIPTIATTSEELLKTSGSLHCAPTMTAD
LISKYLSDKKIGIAVKPCDAKAVNELIKRHRINPDNIYTIGLNCGGTISPITAREMLKLYYDIDPSSVVKEEIAKGKFIV
ELEDGSEKAVSIDELEENGYGRRHNCQRCDLKVPRNADIACGNWGAEDGWTFIEINSEKGAKIVNQAKAEGYIEGKTPSE
KAIGIRSKIENLMTKMGEKEKTSLLDEDISIGSDEWNRCIQCYACRDICPICWCNECELEKSYFENENENCPPSAISFQG
VRLSHMAFSCVNCGQCGDVCPMEIPVDKLFDKIQRKYKNRTGYIAGISEEKPPLYSPKKEIL
>Mature_381_residues
SSNYILARSKDEEILKKAAVGGAVTGILQYLLDNNIIDGVLTLKPEDDIYDGIPTIATTSEELLKTSGSLHCAPTMTADL
ISKYLSDKKIGIAVKPCDAKAVNELIKRHRINPDNIYTIGLNCGGTISPITAREMLKLYYDIDPSSVVKEEIAKGKFIVE
LEDGSEKAVSIDELEENGYGRRHNCQRCDLKVPRNADIACGNWGAEDGWTFIEINSEKGAKIVNQAKAEGYIEGKTPSEK
AIGIRSKIENLMTKMGEKEKTSLLDEDISIGSDEWNRCIQCYACRDICPICWCNECELEKSYFENENENCPPSAISFQGV
RLSHMAFSCVNCGQCGDVCPMEIPVDKLFDKIQRKYKNRTGYIAGISEEKPPLYSPKKEIL

Specific function: Catalyzes the oxidation of formate [H]

COG id: COG1035

COG function: function code C; Coenzyme F420-reducing hydrogenase, beta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR007516
- InterPro:   IPR007525
- InterPro:   IPR012285
- InterPro:   IPR009051 [H]

Pfam domain/function: PF04432 FrhB_FdhB_C; PF04422 FrhB_FdhB_N [H]

EC number: =1.2.1.2 [H]

Molecular weight: Translated: 42407; Mature: 42276

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNYILARSKDEEILKKAAVGGAVTGILQYLLDNNIIDGVLTLKPEDDIYDGIPTIATT
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHCCCCCCCCC
SEELLKTSGSLHCAPTMTADLISKYLSDKKIGIAVKPCDAKAVNELIKRHRINPDNIYTI
HHHHHHCCCCEEECCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEE
GLNCGGTISPITAREMLKLYYDIDPSSVVKEEIAKGKFIVELEDGSEKAVSIDELEENGY
EECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEEECCCCCCEEEHHHHHHCCC
GRRHNCQRCDLKVPRNADIACGNWGAEDGWTFIEINSEKGAKIVNQAKAEGYIEGKTPSE
CCCCCCCCCCEECCCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCEECCCCCCH
KAIGIRSKIENLMTKMGEKEKTSLLDEDISIGSDEWNRCIQCYACRDICPICWCNECELE
HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEECCCCHHH
KSYFENENENCPPSAISFQGVRLSHMAFSCVNCGQCGDVCPMEIPVDKLFDKIQRKYKNR
HHHHCCCCCCCCCCCEEECCEEHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
TGYIAGISEEKPPLYSPKKEIL
CCEEEECCCCCCCCCCCHHHCC
>Mature Secondary Structure 
SSNYILARSKDEEILKKAAVGGAVTGILQYLLDNNIIDGVLTLKPEDDIYDGIPTIATT
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHCCCCCCCCC
SEELLKTSGSLHCAPTMTADLISKYLSDKKIGIAVKPCDAKAVNELIKRHRINPDNIYTI
HHHHHHCCCCEEECCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEE
GLNCGGTISPITAREMLKLYYDIDPSSVVKEEIAKGKFIVELEDGSEKAVSIDELEENGY
EECCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCEEEEEECCCCCCEEEHHHHHHCCC
GRRHNCQRCDLKVPRNADIACGNWGAEDGWTFIEINSEKGAKIVNQAKAEGYIEGKTPSE
CCCCCCCCCCEECCCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCEECCCCCCH
KAIGIRSKIENLMTKMGEKEKTSLLDEDISIGSDEWNRCIQCYACRDICPICWCNECELE
HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEECCCCHHH
KSYFENENENCPPSAISFQGVRLSHMAFSCVNCGQCGDVCPMEIPVDKLFDKIQRKYKNR
HHHHCCCCCCCCCCCEEECCEEHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
TGYIAGISEEKPPLYSPKKEIL
CCEEEECCCCCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]