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The map label for this gene is ygcF [C]

Identifier: 148643115

GI number: 148643115

Start: 1015956

End: 1016654

Strand: Reverse

Name: ygcF [C]

Synonym: Msm_1055

Alternate gene names: 148643115

Gene position: 1016654-1015956 (Counterclockwise)

Preceding gene: 148643116

Following gene: 148643114

Centisome position: 54.86

GC content: 29.47

Gene sequence:

>699_bases
ATGAAAGCTCCAATAATCGAAATTTTTTCAAGTTTTCAGGGGGAAGGCCTTTTCATTGGTCAAAGACAAATCTTTGTTAG
ATTTGCAGGATGTAACTTAAACTGCAGCTATTGCGATACTAATGATAGCAAATCTGAAAAATCAGGTAAATTAATGACAG
TTGATGATGTTTTGGCAGCTATTGAAAATGTTAGAACTCCTGATTGTCATGTAATCTCTTTTACTGGTGGGGAACCTAGT
TTATATCCTGAATTTATTAATGAAGTTGCTCGTCAGACTGATTTGAAAATTCTTTTAGAAACAAACGGCACTTTGCCTGA
AAAAATTGATTTCATTGAAAAATTAGACATTGTATCATTGGATATTAAATTACCTGAACATTTTAACAATGATTTTAATG
AAGATATTTTTATCAATGAAATCAAATCAGTAAATTTATTAATGGCGAAGTCTATAATGTTATATTGTAAAGTAGTTGTA
TTGCCTTCAACAAAAACAAATTTAATTCAAGAGGTAATGGAAAAATTATCTAATAATATTTCAAGCAAAAACAAACTTCA
AATAATTATCCAGCCATCTAGTCCTTTAGAGGATTGGGGTAATTCTAATTCTAAATTATTTGAATTTTCAGAAATTGTTG
GGCAATATTTTGAAGTATCCACCATTCCACAGGTACACAAGATATTGAATATTGAGTGA

Upstream 100 bases:

>100_bases
AATTAGCTGAAAAATATGATAATCTGGAATATGTTGCAGTTGGAGTTAATGAGGGAATCGGACAGGGAGCAATTTATAAA
AAAGTGCTTGATGATTAGTT

Downstream 100 bases:

>100_bases
ATGTGGAAATCTTTTTTGTTTTGAATTTTATTGAATTATTTTTTGTTAGGCGTACACTTAGAACTACTAGAGGTGTGATA
AAATGAAAGATAAATCATCC

Product: coenzyme PQQ synthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MKAPIIEIFSSFQGEGLFIGQRQIFVRFAGCNLNCSYCDTNDSKSEKSGKLMTVDDVLAAIENVRTPDCHVISFTGGEPS
LYPEFINEVARQTDLKILLETNGTLPEKIDFIEKLDIVSLDIKLPEHFNNDFNEDIFINEIKSVNLLMAKSIMLYCKVVV
LPSTKTNLIQEVMEKLSNNISSKNKLQIIIQPSSPLEDWGNSNSKLFEFSEIVGQYFEVSTIPQVHKILNIE

Sequences:

>Translated_232_residues
MKAPIIEIFSSFQGEGLFIGQRQIFVRFAGCNLNCSYCDTNDSKSEKSGKLMTVDDVLAAIENVRTPDCHVISFTGGEPS
LYPEFINEVARQTDLKILLETNGTLPEKIDFIEKLDIVSLDIKLPEHFNNDFNEDIFINEIKSVNLLMAKSIMLYCKVVV
LPSTKTNLIQEVMEKLSNNISSKNKLQIIIQPSSPLEDWGNSNSKLFEFSEIVGQYFEVSTIPQVHKILNIE
>Mature_232_residues
MKAPIIEIFSSFQGEGLFIGQRQIFVRFAGCNLNCSYCDTNDSKSEKSGKLMTVDDVLAAIENVRTPDCHVISFTGGEPS
LYPEFINEVARQTDLKILLETNGTLPEKIDFIEKLDIVSLDIKLPEHFNNDFNEDIFINEIKSVNLLMAKSIMLYCKVVV
LPSTKTNLIQEVMEKLSNNISSKNKLQIIIQPSSPLEDWGNSNSKLFEFSEIVGQYFEVSTIPQVHKILNIE

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 26201; Mature: 26201

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAPIIEIFSSFQGEGLFIGQRQIFVRFAGCNLNCSYCDTNDSKSEKSGKLMTVDDVLAA
CCCHHHHHHHCCCCCEEEEECEEEEEEEECCCCEEEECCCCCCCCHHCCCEEEHHHHHHH
IENVRTPDCHVISFTGGEPSLYPEFINEVARQTDLKILLETNGTLPEKIDFIEKLDIVSL
HHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCEEEE
DIKLPEHFNNDFNEDIFINEIKSVNLLMAKSIMLYCKVVVLPSTKTNLIQEVMEKLSNNI
EEECCHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHCCC
SSKNKLQIIIQPSSPLEDWGNSNSKLFEFSEIVGQYFEVSTIPQVHKILNIE
CCCCEEEEEECCCCCHHHHCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHCCC
>Mature Secondary Structure
MKAPIIEIFSSFQGEGLFIGQRQIFVRFAGCNLNCSYCDTNDSKSEKSGKLMTVDDVLAA
CCCHHHHHHHCCCCCEEEEECEEEEEEEECCCCEEEECCCCCCCCHHCCCEEEHHHHHHH
IENVRTPDCHVISFTGGEPSLYPEFINEVARQTDLKILLETNGTLPEKIDFIEKLDIVSL
HHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCEEEE
DIKLPEHFNNDFNEDIFINEIKSVNLLMAKSIMLYCKVVVLPSTKTNLIQEVMEKLSNNI
EEECCHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHCCC
SSKNKLQIIIQPSSPLEDWGNSNSKLFEFSEIVGQYFEVSTIPQVHKILNIE
CCCCEEEEEECCCCCHHHHCCCCCCEEHHHHHHHHHHHHCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]