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The map label for this gene is mcrD [H]

Identifier: 148643078

GI number: 148643078

Start: 980512

End: 980979

Strand: Reverse

Name: mcrD [H]

Synonym: Msm_1018

Alternate gene names: 148643078

Gene position: 980979-980512 (Counterclockwise)

Preceding gene: 148643079

Following gene: 148643077

Centisome position: 52.94

GC content: 31.2

Gene sequence:

>468_bases
ATGGACGGCAAAAAAATGGATATTGAAATATTCCCATACCGAGTGCTTGGAAGTGACACAACAGAAAAGTTGTTAAATGA
CATCGAATCACTTGAAGATGTTAAAAGGACTGTAATTCATGGTCCGAGATTTCCAAAAACTGAAGAAACTTTACCGCCAC
AATATAGAGAACGTAGAGTGATTAACATTAATGGCGAAGATGTTGTTCTTAAAGTTAAAACTGGTAGAATTTTTGTTGAA
TTGACAATGGAGTCTACAGTTAAAAAAATTGAAGAAATCTGCAAGAAACATATTCCTTTTGGTTTTGATATTAATCAAGA
CAAAACAAATTACATCAGAAAGGAAAGAACAGTTTCTGATAGAATTAAATATGGTGATGCAGATTTACCTGATGAATTAA
TTGGAATGACTGATCAATATTCAAGTTTTGAAGATCATGTAAATATTGTTAGAAAGGATGACTTTTAA

Upstream 100 bases:

>100_bases
CAAGTTGATGAATTTAGAGAACCTCTCAAATATGTTGCTTTAGCAGCTGATGATATTAAAGGTGACATCTAATTAATTTA
ATATTTAAATCTAATTTTTC

Downstream 100 bases:

>100_bases
AATGATTGGAAGATGTACTCACGTAGTTGATTGCAGAGCAACAGGTGGTATGGGCAAAGGTGGAGGTCTTGCACAAAGAG
GCACATTTGCTGAATGTGGG

Product: methyl-coenzyme M reductase, D subunit, McrD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MDGKKMDIEIFPYRVLGSDTTEKLLNDIESLEDVKRTVIHGPRFPKTEETLPPQYRERRVININGEDVVLKVKTGRIFVE
LTMESTVKKIEEICKKHIPFGFDINQDKTNYIRKERTVSDRIKYGDADLPDELIGMTDQYSSFEDHVNIVRKDDF

Sequences:

>Translated_155_residues
MDGKKMDIEIFPYRVLGSDTTEKLLNDIESLEDVKRTVIHGPRFPKTEETLPPQYRERRVININGEDVVLKVKTGRIFVE
LTMESTVKKIEEICKKHIPFGFDINQDKTNYIRKERTVSDRIKYGDADLPDELIGMTDQYSSFEDHVNIVRKDDF
>Mature_155_residues
MDGKKMDIEIFPYRVLGSDTTEKLLNDIESLEDVKRTVIHGPRFPKTEETLPPQYRERRVININGEDVVLKVKTGRIFVE
LTMESTVKKIEEICKKHIPFGFDINQDKTNYIRKERTVSDRIKYGDADLPDELIGMTDQYSSFEDHVNIVRKDDF

Specific function: Unknown

COG id: COG4055

COG function: function code H; Methyl coenzyme M reductase, subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003901
- ProDom:   PD005228 [H]

Pfam domain/function: PF02505 MCR_D [H]

EC number: NA

Molecular weight: Translated: 18139; Mature: 18139

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGKKMDIEIFPYRVLGSDTTEKLLNDIESLEDVKRTVIHGPRFPKTEETLPPQYRERRV
CCCCEEEEEEECEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCEE
ININGEDVVLKVKTGRIFVELTMESTVKKIEEICKKHIPFGFDINQDKTNYIRKERTVSD
EEECCCEEEEEEECCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
RIKYGDADLPDELIGMTDQYSSFEDHVNIVRKDDF
HHCCCCCCCCHHHHCCCCCCCCHHHHHHHEECCCC
>Mature Secondary Structure
MDGKKMDIEIFPYRVLGSDTTEKLLNDIESLEDVKRTVIHGPRFPKTEETLPPQYRERRV
CCCCEEEEEEECEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCEE
ININGEDVVLKVKTGRIFVELTMESTVKKIEEICKKHIPFGFDINQDKTNYIRKERTVSD
EEECCCEEEEEEECCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
RIKYGDADLPDELIGMTDQYSSFEDHVNIVRKDDF
HHCCCCCCCCHHHHCCCCCCCCHHHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]