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The map label for this gene is mtrD [H]

Identifier: 148643073

GI number: 148643073

Start: 975643

End: 976344

Strand: Reverse

Name: mtrD [H]

Synonym: Msm_1013

Alternate gene names: 148643073

Gene position: 976344-975643 (Counterclockwise)

Preceding gene: 148643074

Following gene: 148643072

Centisome position: 52.69

GC content: 38.89

Gene sequence:

>702_bases
ATGGATCCAATTTTTGTAATTTTATTCGTCGCTATAGGCGGAGTTATGATTGGTGCAGGTGTGCACTTTATTCCTGTAGG
GGGAGCTCCTGCAGCTATGGCAACCGCTACTGGTGTAGGTACTGGTACCGCTATGTTAGCTGCTGGTGCAGGTTTAACAG
GTCTTATTACTGCTGCAACTATGACTGGTGAGCCATGGTTTGTAGTAGGTATTGGTGGTGCAATAGGTGCTATGATTATG
ATGGGTATTACTATGCTCATTGCTAATTTCATATATGTATATGGTGTAGGTATTGTTCCTGCAGCATCTAAAGTGCCTGT
TGATATAATTACCAAACGTAATCAAGAAAAGTATAAAACTCCGGGTACTGAAGGACACGGTGTACCTACTACTTGTTTTA
TTAGTGGTCTTATAGGTGGTCTCTTTGGAGGATTTGGTGGTGGATTAGTATACTATGCTATTGATGCTGCTGTTCAAAAA
TCTACTTACTTCACTGACCCTGCTATTAGTATAGGTTTAGCTGCTATATTAGGTGTAGGTGTGTTCTTTATTAATTCGGT
TATTGCTTCTTATAACATTGGTGGTACTATTGAAGGTATGCACGATCCTAAATTTAAAAGGATTGGTAGAGGAGCATTAT
CTTGTGCTATTGCATCTATAGTAGTTGGAGTATTTTGTGTATTATTAACTGGAGGTATTTAA

Upstream 100 bases:

>100_bases
TTCATCATTGTCATTTTATTAATTATTATGAATGACAGATTAGAAGTATTTGCAAGAAACCGTTACGGACCATATGAGGA
AGATTAAGGAGGTTTCGATT

Downstream 100 bases:

>100_bases
AATGTCTGCTGGTGGAAGTGCTGATGGTGCTGTCAGTTCAATAAACAATAATCATTTATTGATTTTAGGAATTATTGGTG
GATTAGTAGGAATTTATTTA

Product: tetrahydromethanopterin S-methyltransferase subunit D

Products: NA

Alternate protein names: N5-methyltetrahydromethanopterin--coenzyme M methyltransferase subunit D [H]

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MDPIFVILFVAIGGVMIGAGVHFIPVGGAPAAMATATGVGTGTAMLAAGAGLTGLITAATMTGEPWFVVGIGGAIGAMIM
MGITMLIANFIYVYGVGIVPAASKVPVDIITKRNQEKYKTPGTEGHGVPTTCFISGLIGGLFGGFGGGLVYYAIDAAVQK
STYFTDPAISIGLAAILGVGVFFINSVIASYNIGGTIEGMHDPKFKRIGRGALSCAIASIVVGVFCVLLTGGI

Sequences:

>Translated_233_residues
MDPIFVILFVAIGGVMIGAGVHFIPVGGAPAAMATATGVGTGTAMLAAGAGLTGLITAATMTGEPWFVVGIGGAIGAMIM
MGITMLIANFIYVYGVGIVPAASKVPVDIITKRNQEKYKTPGTEGHGVPTTCFISGLIGGLFGGFGGGLVYYAIDAAVQK
STYFTDPAISIGLAAILGVGVFFINSVIASYNIGGTIEGMHDPKFKRIGRGALSCAIASIVVGVFCVLLTGGI
>Mature_233_residues
MDPIFVILFVAIGGVMIGAGVHFIPVGGAPAAMATATGVGTGTAMLAAGAGLTGLITAATMTGEPWFVVGIGGAIGAMIM
MGITMLIANFIYVYGVGIVPAASKVPVDIITKRNQEKYKTPGTEGHGVPTTCFISGLIGGLFGGFGGGLVYYAIDAAVQK
STYFTDPAISIGLAAILGVGVFFINSVIASYNIGGTIEGMHDPKFKRIGRGALSCAIASIVVGVFCVLLTGGI

Specific function: Part of a complex that catalyzes the formation of methyl-coenzyme M and tetrahydromethanopterin from coenzyme M and methyl-tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step [H]

COG id: COG4060

COG function: function code H; Tetrahydromethanopterin S-methyltransferase, subunit D

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mtrD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005779
- ProDom:   PD013594 [H]

Pfam domain/function: PF04207 MtrD [H]

EC number: =2.1.1.86 [H]

Molecular weight: Translated: 23370; Mature: 23370

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPIFVILFVAIGGVMIGAGVHFIPVGGAPAAMATATGVGTGTAMLAAGAGLTGLITAAT
CCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHCCCCCCHHHHHHCCCHHHHHHHHE
MTGEPWFVVGIGGAIGAMIMMGITMLIANFIYVYGVGIVPAASKVPVDIITKRNQEKYKT
ECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCHHHCC
PGTEGHGVPTTCFISGLIGGLFGGFGGGLVYYAIDAAVQKSTYFTDPAISIGLAAILGVG
CCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
VFFINSVIASYNIGGTIEGMHDPKFKRIGRGALSCAIASIVVGVFCVLLTGGI
HHHHHHHHHHCCCCCEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDPIFVILFVAIGGVMIGAGVHFIPVGGAPAAMATATGVGTGTAMLAAGAGLTGLITAAT
CCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHCCCCCCHHHHHHCCCHHHHHHHHE
MTGEPWFVVGIGGAIGAMIMMGITMLIANFIYVYGVGIVPAASKVPVDIITKRNQEKYKT
ECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCHHHCC
PGTEGHGVPTTCFISGLIGGLFGGFGGGLVYYAIDAAVQKSTYFTDPAISIGLAAILGVG
CCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
VFFINSVIASYNIGGTIEGMHDPKFKRIGRGALSCAIASIVVGVFCVLLTGGI
HHHHHHHHHHCCCCCEECCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]