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The map label for this gene is rpoH [H]

Identifier: 148642972

GI number: 148642972

Start: 877939

End: 878172

Strand: Reverse

Name: rpoH [H]

Synonym: Msm_0912

Alternate gene names: 148642972

Gene position: 878172-877939 (Counterclockwise)

Preceding gene: 148642973

Following gene: 148642971

Centisome position: 47.39

GC content: 27.35

Gene sequence:

>234_bases
TTGACAATTAATATTCAAGAACATATGCTTGTACCTAAGCATGAAATAATGACTGATTCTGAAATTGAAGATTTAAAAAA
TAGTGCTGACTATGATATTGAAAATCTTCCTAGAATTAAAGTTGATGATCCTGTTGTAAAAGATATTGATGCTAAAGAAA
ATGATATTTTAAGAATTACTCGTGAAAGTGATACTGCAGGTACTTTTGTTACTTATCGTATTGTAAAAAGTTAG

Upstream 100 bases:

>100_bases
CAGAGCGCTTGGCTTTTAACCAAGCGGCCGCGGGTTCAATTCCCGTCGGGCCCGTTTTCTAATTTTATATTTTAACTTTT
CTAGCTGGAGGAATTATATA

Downstream 100 bases:

>100_bases
TTATAATGTTAGAATAGTAAAATTTAGTATAATAAGTTTATTTCTGTATTTTTTTATTGTTTTTTGGAAATTCATTATAA
TAAATTTGAACTTAGTTTGA

Product: DNA-directed RNA polymerase subunit H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 77; Mature: 76

Protein sequence:

>77_residues
MTINIQEHMLVPKHEIMTDSEIEDLKNSADYDIENLPRIKVDDPVVKDIDAKENDILRITRESDTAGTFVTYRIVKS

Sequences:

>Translated_77_residues
MTINIQEHMLVPKHEIMTDSEIEDLKNSADYDIENLPRIKVDDPVVKDIDAKENDILRITRESDTAGTFVTYRIVKS
>Mature_76_residues
TINIQEHMLVPKHEIMTDSEIEDLKNSADYDIENLPRIKVDDPVVKDIDAKENDILRITRESDTAGTFVTYRIVKS

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG2012

COG function: function code K; DNA-directed RNA polymerase, subunit H, RpoH/RPB5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoH/eukaryotic RPB5 RNA polymerase subunit family [H]

Homologues:

Organism=Homo sapiens, GI14589951, Length=76, Percent_Identity=40.7894736842105, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020609
- InterPro:   IPR000783
- InterPro:   IPR020608
- ProDom:   PD005155 [H]

Pfam domain/function: PF01191 RNA_pol_Rpb5_C [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 8888; Mature: 8757

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: PS01110 RNA_POL_H_23KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTINIQEHMLVPKHEIMTDSEIEDLKNSADYDIENLPRIKVDDPVVKDIDAKENDILRIT
CEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEE
RESDTAGTFVTYRIVKS
ECCCCCCEEEEEEEECC
>Mature Secondary Structure 
TINIQEHMLVPKHEIMTDSEIEDLKNSADYDIENLPRIKVDDPVVKDIDAKENDILRIT
EECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEE
RESDTAGTFVTYRIVKS
ECCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]