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The map label for this gene is mrtD [H]

Identifier: 148642964

GI number: 148642964

Start: 866847

End: 867353

Strand: Reverse

Name: mrtD [H]

Synonym: Msm_0904

Alternate gene names: 148642964

Gene position: 867353-866847 (Counterclockwise)

Preceding gene: 148642965

Following gene: 148642963

Centisome position: 46.8

GC content: 27.61

Gene sequence:

>507_bases
ATGTGTGAATCTGATAAACTTCATGATGAAATTAATGTCATTGACATTAAAATTTATCCGAATAGATTTTTAAAGCCAAA
AACTACTGAATTATTATTAAATAAAATATGTGGATTAGAAGGTTATGTTAGATTTTTAATTCATGGACCATCTTTGCCTA
AAAAAGTTTTTTATGGTCCTGGTAAAGGGCATGATGTAAATCACGGTGATAGGAAGAGTATTTTAGTCAATGGAAATGGC
ATTGATTTAAAAGTGATGGTTGGAGAAATTATAATTACTGTGGAATTGGATAAATTCAATGATTTCATGAATCAGTTGGA
AGATATTTTAACAGAAACTTTGTCTGTCGAGTATTCTTTGTTAGTGGGAATTTTTACAAGAACAACATCAACAATTTCTG
ACTATCTCAAATATGGTATTGGATTTGAAAATCTTATTGATAAAAGATATATAGGTTTAATAGATTCTCGTGCAAGAAGT
TCTGAATCAATAAGTATAATTAAATAA

Upstream 100 bases:

>100_bases
CATTGATTGGAACTGTTTATGGTACTATAGATAATCTTAGAAATCCTATTATTAATGTAGCCAAATCCGCAGGTGAACTT
AAAATATAAGGTGATTAAGC

Downstream 100 bases:

>100_bases
TGTTGGTGTATATTATGTCATATAAAGCACAATTCACTCCTGGTGAAACAAAAATAGCTGAAAATAGAAGAAAACATATG
GATCCTACTCATAAATTTAA

Product: methyl-coenzyme M reductase, D subunit, McrD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MCESDKLHDEINVIDIKIYPNRFLKPKTTELLLNKICGLEGYVRFLIHGPSLPKKVFYGPGKGHDVNHGDRKSILVNGNG
IDLKVMVGEIIITVELDKFNDFMNQLEDILTETLSVEYSLLVGIFTRTTSTISDYLKYGIGFENLIDKRYIGLIDSRARS
SESISIIK

Sequences:

>Translated_168_residues
MCESDKLHDEINVIDIKIYPNRFLKPKTTELLLNKICGLEGYVRFLIHGPSLPKKVFYGPGKGHDVNHGDRKSILVNGNG
IDLKVMVGEIIITVELDKFNDFMNQLEDILTETLSVEYSLLVGIFTRTTSTISDYLKYGIGFENLIDKRYIGLIDSRARS
SESISIIK
>Mature_168_residues
MCESDKLHDEINVIDIKIYPNRFLKPKTTELLLNKICGLEGYVRFLIHGPSLPKKVFYGPGKGHDVNHGDRKSILVNGNG
IDLKVMVGEIIITVELDKFNDFMNQLEDILTETLSVEYSLLVGIFTRTTSTISDYLKYGIGFENLIDKRYIGLIDSRARS
SESISIIK

Specific function: Unknown

COG id: COG4055

COG function: function code H; Methyl coenzyme M reductase, subunit D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003901
- ProDom:   PD005228 [H]

Pfam domain/function: PF02505 MCR_D [H]

EC number: NA

Molecular weight: Translated: 19011; Mature: 19011

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCESDKLHDEINVIDIKIYPNRFLKPKTTELLLNKICGLEGYVRFLIHGPSLPKKVFYGP
CCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCEEECC
GKGHDVNHGDRKSILVNGNGIDLKVMVGEIIITVELDKFNDFMNQLEDILTETLSVEYSL
CCCCCCCCCCCCEEEECCCCCEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
LVGIFTRTTSTISDYLKYGIGFENLIDKRYIGLIDSRARSSESISIIK
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEEC
>Mature Secondary Structure
MCESDKLHDEINVIDIKIYPNRFLKPKTTELLLNKICGLEGYVRFLIHGPSLPKKVFYGP
CCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCEEECC
GKGHDVNHGDRKSILVNGNGIDLKVMVGEIIITVELDKFNDFMNQLEDILTETLSVEYSL
CCCCCCCCCCCCEEEECCCCCEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
LVGIFTRTTSTISDYLKYGIGFENLIDKRYIGLIDSRARSSESISIIK
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7929010; 9371463 [H]